PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981020.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 516aa MW: 57270.6 Da PI: 7.0095

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981020.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.2e-17	132	178	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l+++vkq+G + W+ Ia+ m gR +kqc++rw+++l XP_024981020.1 132 KGQWTDEEDRKLLRLVKQHGVRKWAHIAEQMT-GRAGKQCRERWHNHL 178 799**************************9.***********97 PP
2	Myb_DNA-binding	51.9	1.8e-16	184	226	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W+++E+ lv+a+++ G++ W+ Ia+ ++ gRt++ +k++w+ XP_024981020.1 184 KDTWSEDEEIMLVEAHQKVGNK-WAEIAKLIP-GRTENAIKNHWN 226 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MEGGGHGGGG FPNYVNLQKH PLVPPPLTAI GRFLQGQRRQ NHFPYHNFEH NKGIVNPANG 60 VCGFSSSSNG GIGGLYGEHE VSLVPCLPMD KICAADHDVF LKNYGNIGLN HEVIKSGKSM 120 KSKGGGRKRL IKGQWTDEED RKLLRLVKQH GVRKWAHIAE QMTGRAGKQC RERWHNHLRP 180 DIKKDTWSED EEIMLVEAHQ KVGNKWAEIA KLIPGRTENA IKNHWNATKR RQSSRRKSKK 240 NEAKSRKSRS SILQEYIRSK TTTNARDHNV ASTTTTATAT HTNATPGSST AICADDPPIK 300 FNILFPHELP NSNSDDTPSL DMDQSYDDEL TFMQSFFGDS NLIRTQDSNT TSNEPSDHII 360 DLKSSLDMNP LGFSSSSPYG FASSSFISNE SSMVHIKDPK PSLDVNPLGF DGNLQFGFHS 420 SSLVPDHDEN PNLYLNKEDS SKTQLASDVY ISYLLEGATT LSNSSDHCCY GDMKRDLVFD 480 ADEQSASSST DGTKEMDLME MVFSNSQFSQ GSNFLI

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MEGGGHGGGG FPNYVNLQKH PLVPPPLTAI GRFLQGQRRQ NHFPYHNFEH NKGIVNPANG  60
VCGFSSSSNG GIGGLYGEHE VSLVPCLPMD KICAADHDVF LKNYGNIGLN HEVIKSGKSM  120
KSKGGGRKRL IKGQWTDEED RKLLRLVKQH GVRKWAHIAE QMTGRAGKQC RERWHNHLRP  180
DIKKDTWSED EEIMLVEAHQ KVGNKWAEIA KLIPGRTENA IKNHWNATKR RQSSRRKSKK  240
NEAKSRKSRS SILQEYIRSK TTTNARDHNV ASTTTTATAT HTNATPGSST AICADDPPIK  300
FNILFPHELP NSNSDDTPSL DMDQSYDDEL TFMQSFFGDS NLIRTQDSNT TSNEPSDHII  360
DLKSSLDMNP LGFSSSSPYG FASSSFISNE SSMVHIKDPK PSLDVNPLGF DGNLQFGFHS  420
SSLVPDHDEN PNLYLNKEDS SKTQLASDVY ISYLLEGATT LSNSSDHCCY GDMKRDLVFD  480
ADEQSASSST DGTKEMDLME MVFSNSQFSQ GSNFLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11050.1	3e-59	MYB family protein