PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024981016.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARF

Protein Properties

Length: 679aa MW: 74806.2 Da PI: 6.4644

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024981016.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.6	5.8e-24	116	217	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + + XP_024981016.1 116 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFV--RAE 206 89**************************996555555..8********************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_024981016.1 207 NGDLCVGIRRA 217 8999**997 PP
2	Auxin_resp	110.3	1.9e-36	282	364	2	83
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 + a+++++Fev Y+Prast++F+vk++++ ++l++++++GmRfkm fetedss++++ +Gtv++v+ +dp++WpnS+Wr+L+ XP_024981016.1 282 TSLAANGQPFEVAYYPRASTPDFCVKASSLTASLSSQWCAGMRFKMPFETEDSSRISWfMGTVSSVEVADPFHWPNSPWRLLQ 364 67899****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MKEADKGVNP QLWHACAGGM IQMPLPSSNV YYFPQGHAEH TLTNVDFSGM PRVPALILCR 60 VIDVKFLADL ETDEVYAKIR LMPLGNIDNG YNGDVDDGVS VGTRNLSESS EKPSSFAKTL 120 TQSDANNGGG FSVPRYCAET IFPRLDYSAD PPVQTVIAKD VHGETWKFRH IYRGTPRRHL 180 LTTGWSTFVN QKKLVAGDSI VFVRAENGDL CVGIRRAKRG GAGGPDSSSG WNSYSGSSAS 240 FYGGFSAYLR DNENKLIRSG SNRNINSSGR GKVRPEDVIE ATSLAANGQP FEVAYYPRAS 300 TPDFCVKASS LTASLSSQWC AGMRFKMPFE TEDSSRISWF MGTVSSVEVA DPFHWPNSPW 360 RLLQVTWDEP DLLQNVKRVS PWLVELVSSM PVIHLSPFSP QRKKLRLPQP PDLPQGDYTL 420 SSFSGNPLGP SSPFCCPPDN VPASIQGARH ARFGIPLLDL NVTHKLQLGL FPSSLKHLDS 480 HAKDPDDIIE QPMDGKNDDI SCLLTMGSSS LKLDKSDHKV KAPLFLLFGQ PIHIEQQISS 540 DQVPVAKPSS NRNANEFLQS GEHGLNSGHC KVFLESEDVG RTIDLSVLES YEELEKTLAN 600 LFGIETFNSL PHVLYKDSTG DVKRIGDEPF SEFARKARRL TIPLDACNLD DKRKWNTNLQ 660 TGEYGVESSN QTGPMTIFA

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MKEADKGVNP QLWHACAGGM IQMPLPSSNV YYFPQGHAEH TLTNVDFSGM PRVPALILCR  60
VIDVKFLADL ETDEVYAKIR LMPLGNIDNG YNGDVDDGVS VGTRNLSESS EKPSSFAKTL  120
TQSDANNGGG FSVPRYCAET IFPRLDYSAD PPVQTVIAKD VHGETWKFRH IYRGTPRRHL  180
LTTGWSTFVN QKKLVAGDSI VFVRAENGDL CVGIRRAKRG GAGGPDSSSG WNSYSGSSAS  240
FYGGFSAYLR DNENKLIRSG SNRNINSSGR GKVRPEDVIE ATSLAANGQP FEVAYYPRAS  300
TPDFCVKASS LTASLSSQWC AGMRFKMPFE TEDSSRISWF MGTVSSVEVA DPFHWPNSPW  360
RLLQVTWDEP DLLQNVKRVS PWLVELVSSM PVIHLSPFSP QRKKLRLPQP PDLPQGDYTL  420
SSFSGNPLGP SSPFCCPPDN VPASIQGARH ARFGIPLLDL NVTHKLQLGL FPSSLKHLDS  480
HAKDPDDIIE QPMDGKNDDI SCLLTMGSSS LKLDKSDHKV KAPLFLLFGQ PIHIEQQISS  540
DQVPVAKPSS NRNANEFLQS GEHGLNSGHC KVFLESEDVG RTIDLSVLES YEELEKTLAN  600
LFGIETFNSL PHVLYKDSTG DVKRIGDEPF SEFARKARRL TIPLDACNLD DKRKWNTNLQ  660
TGEYGVESSN QTGPMTIFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein