PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980993.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 503aa MW: 55023.1 Da PI: 7.0672

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980993.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.3e-09	341	388	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_024980993.1 341 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 388 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MDRDFFLNAG LHFEPSSQMS SWKLMASVPE MNCPPEQSSV DRFNHFESAL SSMVSSPVSS 60 SVANNDNFAV RELIGKLGSI RNGGGEVSLA AIAPATATVT ARYNSNNTSC YNTPLSSPPS 120 KLNWPIADHF AKETTPTLRN SIPYGGAGLP SLAADPGFAE RAAKFSCFGS RSFNGRSSQL 180 GLNSNNPDFQ SRSSVSPLSG NAKLHRVSSS PSLKIDGSAM AAIQENKNPT ETHINGSGSD 240 NKTNSIEDFS ASEQMGFKNQ NDSNSRKRKS SSSRGKAMEI ASTIVKEEGN DDSNSKKPKK 300 TEKESKTEID TNGETEKKTN LPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKLL 360 QDLVPGCNKV TGKALMLDEI INYVQSLQHQ VEFLSMKLAT VNPRSDFEIS KDMSQSNGNL 420 SQQLYPIESS ASDFYQQNPQ QQVLFIGSTP ITQSPVDPLT PVHRFTEPFS QFAGFEGDDL 480 HSIVKMGFGD NRNNQTSEMK IEL

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MDRDFFLNAG LHFEPSSQMS SWKLMASVPE MNCPPEQSSV DRFNHFESAL SSMVSSPVSS  60
SVANNDNFAV RELIGKLGSI RNGGGEVSLA AIAPATATVT ARYNSNNTSC YNTPLSSPPS  120
KLNWPIADHF AKETTPTLRN SIPYGGAGLP SLAADPGFAE RAAKFSCFGS RSFNGRSSQL  180
GLNSNNPDFQ SRSSVSPLSG NAKLHRVSSS PSLKIDGSAM AAIQENKNPT ETHINGSGSD  240
NKTNSIEDFS ASEQMGFKNQ NDSNSRKRKS SSSRGKAMEI ASTIVKEEGN DDSNSKKPKK  300
TEKESKTEID TNGETEKKTN LPEPPKDYIH VRARRGQATD SHSLAERVRR EKISERMKLL  360
QDLVPGCNKV TGKALMLDEI INYVQSLQHQ VEFLSMKLAT VNPRSDFEIS KDMSQSNGNL  420
SQQLYPIESS ASDFYQQNPQ QQVLFIGSTP ITQSPVDPLT PVHRFTEPFS QFAGFEGDDL  480
HSIVKMGFGD NRNNQTSEMK IEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	270	SRKRKS
2	266	303	RKRKSSSSRGKAMEIASTIVKEEGNDDSNSKKPKKTEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-83	bHLH family protein