PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980934.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 643aa MW: 74895.1 Da PI: 9.3047

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980934.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.5	1.8e-07	2	40	53	90
FAR1 53 rtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 r+++ +r gC a+lk+++ + +++ev+k++++HnH l+ XP_024980934.1 2 RNSNIKRSGCGACLKIHLVNePNQYEVYKFVEQHNHILF 40 67889***********9989************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence
MRNSNIKRSG CGACLKIHLV NEPNQYEVYK FVEQHNHILF NKEEMMFSRS KRQLHYADHK 60 NVFHGSSSKV GVTKSHRFMK AVKGVVDSSG GTVRDHQNFK RDMAYFVGNK DAQMLLNVMD 120 NRRKVCPEFF FEYKCDDKEL LAIFWADETA RSNYREFGDA ISFDATFRTN KHAMIFVPFV 180 AIDNHKKSVV VGAALIHNES VVDYTWVLKA FVKAHGRQPR FVITDQCASM KQAIPIAFPE 240 SRHRLCMWHI TKXVKSKISN HLQHRTQFVS EFNKLVWNVH LCPNEFEMQW NNLIDFYGLR 300 GDPWFDELYN IRESXIPAYY KDFHMSGLMK TTSRSESINA FFNVYAHFWH DLVVFLRSFD 360 NAIESQRATH GSLEVTTKST IPRLVSPCKL EAHAAEVYTX TIFFEIQKEL RKAVWLCGWD 420 GFTDDGENRV YIITHKNKAS KVTTKYTVIK NKMENSYDCS CNCFVRNGIL CRHALKVMLN 480 DEVDRIPEKY ILRRWRRDLV PVEWLPARFR YGEVDAEKER LMSLAYSYFE RILGRVRNEK 540 DILARFVDQL EQWDSKVDIE LPLQSHTEET TASIKEFLGV SQPETVDVLP PTGIRNKGCG 600 TGKRLISAAE KAISNGKKQK RKCRLCGQMA THDSRNCPKR DYI

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence

MRNSNIKRSG CGACLKIHLV NEPNQYEVYK FVEQHNHILF NKEEMMFSRS KRQLHYADHK  60
NVFHGSSSKV GVTKSHRFMK AVKGVVDSSG GTVRDHQNFK RDMAYFVGNK DAQMLLNVMD  120
NRRKVCPEFF FEYKCDDKEL LAIFWADETA RSNYREFGDA ISFDATFRTN KHAMIFVPFV  180
AIDNHKKSVV VGAALIHNES VVDYTWVLKA FVKAHGRQPR FVITDQCASM KQAIPIAFPE  240
SRHRLCMWHI TKXVKSKISN HLQHRTQFVS EFNKLVWNVH LCPNEFEMQW NNLIDFYGLR  300
GDPWFDELYN IRESXIPAYY KDFHMSGLMK TTSRSESINA FFNVYAHFWH DLVVFLRSFD  360
NAIESQRATH GSLEVTTKST IPRLVSPCKL EAHAAEVYTX TIFFEIQKEL RKAVWLCGWD  420
GFTDDGENRV YIITHKNKAS KVTTKYTVIK NKMENSYDCS CNCFVRNGIL CRHALKVMLN  480
DEVDRIPEKY ILRRWRRDLV PVEWLPARFR YGEVDAEKER LMSLAYSYFE RILGRVRNEK  540
DILARFVDQL EQWDSKVDIE LPLQSHTEET TASIKEFLGV SQPETVDVLP PTGIRNKGCG  600
TGKRLISAAE KAISNGKKQK RKCRLCGQMA THDSRNCPKR DYI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-71	FAR1 family protein