PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980843.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 852aa MW: 98519.8 Da PI: 8.8649

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980843.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.8	2.1e-19	154	249	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++YA+e+GF+vr s++k + + g+it+r +vCskeg+++++ + ++ r+++ +r gC a+lk+++ k +++ev+k++++HnH XP_024980843.1 154 KMYRKYANEAGFDVRLSNKKIN-KJGRITSRFYVCSKEGRPQSKYFDsldvipGGRTIRHSNIKRSGCGACLKIHLVKeLNQYEVYKFVEQHNHI 247 68*************98887.6777************99999999998999999************99899***********9 PP FAR1 89 la 90 l+ XP_024980843.1 248 LF 249 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 852 aa Download sequence
MDPISFNETF VKDIFDEIDG ANGKRKGVVH DREFATATND GTTQDKCNYS ARDDDGCIRQ 60 NETIPERSDS ITDGVSAEFD DDDVASLSNE NEELVHTLVL HMGSLQNVHA RACIINIKTW 120 GKTSDGLKYW FPSVDVKYKP KVGDSFESVE SAKKMYRKYA NEAGFDVRLS NKKINKJGRI 180 TSRFYVCSKE GRPQSKYFDS LDVIPGGRTI RHSNIKRSGC GACLKIHLVK ELNQYEVYKF 240 VEQHNHILFN EEEMRFSRSK RQLHYTDHKN IFHGSSSKVG VTKSHRFMKA VKGGVDSSGG 300 TVRDHQNFKR DMAYFVGNKD AQMLLNVMAN RRKVCPEFFF EYKCDDKELL AIFWADETAR 360 SNYREFGDAI SFDATFRTNK HAIIFVPFVA IYNHKKSVVV GAALIHNESV VDYTWVLKAF 420 VKAHGRQPRF VITDQCASMK QAIXIAFPES RHRLCMWHIT KKVKSKISNY LQHRTQFVSE 480 FNKLVWNVHL GPNEFEMQWN NLIDFYGLRG DPWFDELYNI RESWIPAYYK DYHMSGLMKT 540 TSTSESINAF FNVYAHFWHD LVVFLRPFDN AIESQQVTHG SLEVTTKSTI PRLVSPCKLE 600 AHAAEVYTRT IFFEIQKELR KAVWLCGWDG FTDVSETRVY TITHKNKASM VTTKYTVIKN 660 KMENSYDCSC NCFVRNGILC RHALKVMLND EVDRIPDKYI LRRWRRDLVP VEWLPARFRY 720 GEVDAEKERL MSLAYSYFER ILGRVRNEKD ILSRFVDQLE QWDSKVDIEL PLQSHTEETT 780 SSIKEFLGVS QPETVDVLPP TGIRNKGCGT GKRLISAAEK AISNGKKQKR KCRLCGQMAT 840 HDSRNCPKRD YI

Sequence ? help Back to Top

Protein Sequence Length: 852 aa Download sequence

MDPISFNETF VKDIFDEIDG ANGKRKGVVH DREFATATND GTTQDKCNYS ARDDDGCIRQ  60
NETIPERSDS ITDGVSAEFD DDDVASLSNE NEELVHTLVL HMGSLQNVHA RACIINIKTW  120
GKTSDGLKYW FPSVDVKYKP KVGDSFESVE SAKKMYRKYA NEAGFDVRLS NKKINKJGRI  180
TSRFYVCSKE GRPQSKYFDS LDVIPGGRTI RHSNIKRSGC GACLKIHLVK ELNQYEVYKF  240
VEQHNHILFN EEEMRFSRSK RQLHYTDHKN IFHGSSSKVG VTKSHRFMKA VKGGVDSSGG  300
TVRDHQNFKR DMAYFVGNKD AQMLLNVMAN RRKVCPEFFF EYKCDDKELL AIFWADETAR  360
SNYREFGDAI SFDATFRTNK HAIIFVPFVA IYNHKKSVVV GAALIHNESV VDYTWVLKAF  420
VKAHGRQPRF VITDQCASMK QAIXIAFPES RHRLCMWHIT KKVKSKISNY LQHRTQFVSE  480
FNKLVWNVHL GPNEFEMQWN NLIDFYGLRG DPWFDELYNI RESWIPAYYK DYHMSGLMKT  540
TSTSESINAF FNVYAHFWHD LVVFLRPFDN AIESQQVTHG SLEVTTKSTI PRLVSPCKLE  600
AHAAEVYTRT IFFEIQKELR KAVWLCGWDG FTDVSETRVY TITHKNKASM VTTKYTVIKN  660
KMENSYDCSC NCFVRNGILC RHALKVMLND EVDRIPDKYI LRRWRRDLVP VEWLPARFRY  720
GEVDAEKERL MSLAYSYFER ILGRVRNEKD ILSRFVDQLE QWDSKVDIEL PLQSHTEETT  780
SSIKEFLGVS QPETVDVLPP TGIRNKGCGT GKRLISAAEK AISNGKKQKR KCRLCGQMAT  840
HDSRNCPKRD YI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-79	FAR1 family protein