PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024980839.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | FAR1 | ||||||||
Protein Properties | Length: 295aa MW: 34202.4 Da PI: 8.8358 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52.4 | 1.7e-16 | 69 | 164 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 ++Y++Y+ +GF++r ++k + ge+ ++ f ske ++ +++ + e++rr+ + +rtgCka+lkv+ k +g++ev+++ + HnH XP_024980839.1 69 NMYRKYGDVAGFDIRLGSKKLN-ALGEVQTHYFIWSKEANPPKKEFDslevspGERKRRNXNFKRTGCKACLKVHYVKaSGRYEVYHFIEGHNHM 162 58***************98777.8899************9999988899**99999********************999**************** PP FAR1 89 la 90 l+ XP_024980839.1 163 LC 164 98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence |
MSDQREGICS NEIHDKYSTV VGNEADCYDE LSQEMGESPG GTKIWVPNVD SNMCPKVGDL 60 FSSIEAVENM YRKYGDVAGF DIRLGSKKLN ALGEVQTHYF IWSKEANPPK KEFDSLEVSP 120 GERKRRNXNF KRTGCKACLK VHYVKASGRY EVYHFIEGHN HMLCHSDEKM FTRSRRKLDY 180 KERRNVYHAS SSKVGITQSR RMQLAMNGGL VASGGTTRDH MNFRRDIMLF VGDKDAQMLI 240 NKMSKRREHC SEYFFEYKCD ERELIAIFWA DKTSRMNYKH FGDTISFDAT FRTNK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-20 | FAR1 family protein |