PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980834.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 496aa MW: 56871.2 Da PI: 6.6691

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980834.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.9	2.2e-15	89	185	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnH 87 ++Y++YA +GF++r s++k++ + g ++ + vC k+gk+++++ + ++++ r+++ + t+Cka+++ k + ++ ++++ + +HnH XP_024980834.1 89 EMYRRYADIAGFDIRLSTQKTR-KGGIVKLKYVVCHKHGKPKKRSVDsvevdgHRRQVRNTNFKVTDCKASVRFKYIEgsQSSYRLYYFCPNHNH 182 58************987665.78878888889******9999999988888899999*********999899*********** PP FAR1 88 ela 90 +l XP_024980834.1 183 DLI 185 995 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MDDLNVVGKE VCSGSSYSND DSVGFSQDCF LEDNFYESSS DNDEEDHFVL PAQXVIGSPC 60 CDGVCISSVP SEFQPVVGSI FASLEDGIEM YRRYADIAGF DIRLSTQKTR KGGIVKLKYV 120 VCHKHGKPKK RSVDSVEVDG HRRQVRNTNF KVTDCKASVR FKYIEGSQSS YRLYYFCPNH 180 NHDLIDDADR ILSRKSRQLS YDDKVMVHRS VRSNIGPVRA HKLQVCLKGG YDEVGSTVVD 240 YKNFKRDLNN YIGDGDVQMV VNMLNDRRQY GTNFXFEYKI DNGRLVSMFW ANELTRLNYA 300 EFGDVMSFDA TYRFNKYTMV FLPFIGIDNH RRSVVFGSGL ITEETIQAYT WLLESFLKVH 360 GRQPTLVLTD QDASIKEAIP VVFPDARHRL CMWHIMKKLP AKVGSDIILN TNFRKRLLKL 420 VWSVHLEPDE FEVKWASLLN EFDLNNHPWL EDDDKCVNGV IIVLMQQLLL TPKILMPRLT 480 SDHRSCDNGV IDVLIV

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MDDLNVVGKE VCSGSSYSND DSVGFSQDCF LEDNFYESSS DNDEEDHFVL PAQXVIGSPC  60
CDGVCISSVP SEFQPVVGSI FASLEDGIEM YRRYADIAGF DIRLSTQKTR KGGIVKLKYV  120
VCHKHGKPKK RSVDSVEVDG HRRQVRNTNF KVTDCKASVR FKYIEGSQSS YRLYYFCPNH  180
NHDLIDDADR ILSRKSRQLS YDDKVMVHRS VRSNIGPVRA HKLQVCLKGG YDEVGSTVVD  240
YKNFKRDLNN YIGDGDVQMV VNMLNDRRQY GTNFXFEYKI DNGRLVSMFW ANELTRLNYA  300
EFGDVMSFDA TYRFNKYTMV FLPFIGIDNH RRSVVFGSGL ITEETIQAYT WLLESFLKVH  360
GRQPTLVLTD QDASIKEAIP VVFPDARHRL CMWHIMKKLP AKVGSDIILN TNFRKRLLKL  420
VWSVHLEPDE FEVKWASLLN EFDLNNHPWL EDDDKCVNGV IIVLMQQLLL TPKILMPRLT  480
SDHRSCDNGV IDVLIV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-50	FAR1 family protein