PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980777.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Protein Properties

Length: 768aa MW: 84531.1 Da PI: 6.5119

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980777.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	66.6	3.7e-21	630	726	2	95
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +kvl++sdv+++gr+vlpkk ae+h +++++ ++ + +ed ++++W++++++ ++ks++y+l+ ++ +FvkangL+egDf+v++ ++ +++ XP_024980777.1 630 QKVLKQSDVGSLGRIVLPKKEAESHlpDLDSRDGISIAMEDiGTSQVWNMRYRFwpNNKSRMYLLE-NTGDFVKANGLQEGDFIVLY--SDvKCG 721 79***********************999999****7777***99777777777777.******************..555999 PP ..EEE CS B3 91 elvvk 95 +++++ XP_024980777.1 722 KYLIR 726 88776 PP

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence
MYPKEEKDVD DHHRMEGYDH HVIDEQENCK STGFDALGTT MMTSTDDQRG IWEIDVRAQQ 60 QNLLHEMNDP SMFYNDQFPQ IPDFPCMSSS SSSSSNPAPA KPISSATTTS SASSASASSS 120 TSSAASWAVL KSEYVTEEED DQLEELGVDR RKRCHRSEEM PAAVMSTAVV EAVGRPLEMA 180 DGSGSIDCMD VMENFGYMDL IDGNEIWDPS SIFEQNPPEN LQQECLNNSN GSEVVQDGGG 240 VGGGGRLDEL GAVFFEWLKS NKEFISAEDM RNIKLKKSTV ECASKRLGSS KEGKKQLLKL 300 ILEWVQQHQL QRKASGGVEG PAPATAPTPT AAATTTQYPL QHFQGLPSQP PPPTTPPPFH 360 CNSWVQPNDM NHGFSPTPWI PPPLPYPPYM ADQATNGMAM VAAQPSGTFS YMGGGDYNSA 420 MNCHLNPYNN PGSGEYQVLE SAPSWNPSQI TMAAASPYNN QFPDVGNNYG PPIMPLPSAY 480 TDQYPYNPVF AGGGGGGGEQ RLMRLGSSAT KEARKKRMAR QRRTYFHHHH HSRQNQQHNH 540 PNQVANSDHH PHTMLVDDNC SGKSQGGNWL YWPSTPSATT PAATVLPPPM EAPQRPPSRI 600 PQTSDRQSKQ TSSDKRQGLK TEKNLKFLLQ KVLKQSDVGS LGRIVLPKKE AESHLPDLDS 660 RDGISIAMED IGTSQVWNMR YRFWPNNKSR MYLLENTGDF VKANGLQEGD FIVLYSDVKC 720 GKYLIRGVKV RQPATGKPEA KKPAKRSYRS TSQSARSSPS SPTKITAI

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence

MYPKEEKDVD DHHRMEGYDH HVIDEQENCK STGFDALGTT MMTSTDDQRG IWEIDVRAQQ  60
QNLLHEMNDP SMFYNDQFPQ IPDFPCMSSS SSSSSNPAPA KPISSATTTS SASSASASSS  120
TSSAASWAVL KSEYVTEEED DQLEELGVDR RKRCHRSEEM PAAVMSTAVV EAVGRPLEMA  180
DGSGSIDCMD VMENFGYMDL IDGNEIWDPS SIFEQNPPEN LQQECLNNSN GSEVVQDGGG  240
VGGGGRLDEL GAVFFEWLKS NKEFISAEDM RNIKLKKSTV ECASKRLGSS KEGKKQLLKL  300
ILEWVQQHQL QRKASGGVEG PAPATAPTPT AAATTTQYPL QHFQGLPSQP PPPTTPPPFH  360
CNSWVQPNDM NHGFSPTPWI PPPLPYPPYM ADQATNGMAM VAAQPSGTFS YMGGGDYNSA  420
MNCHLNPYNN PGSGEYQVLE SAPSWNPSQI TMAAASPYNN QFPDVGNNYG PPIMPLPSAY  480
TDQYPYNPVF AGGGGGGGEQ RLMRLGSSAT KEARKKRMAR QRRTYFHHHH HSRQNQQHNH  540
PNQVANSDHH PHTMLVDDNC SGKSQGGNWL YWPSTPSATT PAATVLPPPM EAPQRPPSRI  600
PQTSDRQSKQ TSSDKRQGLK TEKNLKFLLQ KVLKQSDVGS LGRIVLPKKE AESHLPDLDS  660
RDGISIAMED IGTSQVWNMR YRFWPNNKSR MYLLENTGDF VKANGLQEGD FIVLYSDVKC  720
GKYLIRGVKV RQPATGKPEA KKPAKRSYRS TSQSARSSPS SPTKITAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	4e-83	B3 family protein