PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024980771.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 499aa MW: 54119.6 Da PI: 6.1407 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.2 | 8.2e-05 | 311 | 331 | 35 | 55 |
TS-STCHHHHHHHHHHHHHHH CS HLH 35 skKlsKaeiLekAveYIksLq 55 s++ +Ka++L +A+eY+ksLq XP_024980771.1 311 SERSDKASMLDEAIEYLKSLQ 331 67889***************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence |
MNHCVPDFET DDDYFFSASA NSKRHKKSAM GDEDIMELLW QNGQVVVQSQ NQRSAGNKKS 60 ETMPSTAGRE IRSGVIDEET TPSNLFMQED EMVSWLHYPS DDNSLDLYLH NNDIPYPVLP 120 SSSSAPATTL PSSLPPPPPP LVTVPPTRPP IPPLNRVDEE PSQPKFANFL HFSRSNKRGL 180 AGSGPSSSKQ MSQAITQSTV VESNIGCRGS MSSFGGAGTS SAGTGREPET CDVSASSSPG 240 TGGSGASASV EPSSHKPPPA TDDRKRKGRD TDDTECYSED LEFEYHDPKK KSRGSASSTK 300 RSRAAEVHNL SERSDKASML DEAIEYLKSL QMQVQMMSMG YNMVPMMFPG VQRYMPTMPA 360 MGMGMGMGMG MGMDHIGMNR GMVPYPSVLP GPQMPNSAAA HMGQRFPVPR FQMAQVPIMG 420 PGTGEAANPS DPMMNSFPTQ NANQPRVPFL DPYQQCLGLP QTQLAQQQQQ QQNQTGMAAV 480 TSKPSSSKDV RYPQRHPTG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 264 | 291 | RKRKGRDTDDTECYSEDLEFEYHDPKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.1 | 2e-23 | bHLH family protein |