PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980769.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 521aa MW: 56869.8 Da PI: 6.9043

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980769.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.4	4.1e-16	307	353	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq XP_024980769.1 307 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 353 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence
MNHCVPDFET DDDYFFSASA NSKRHKKSAM GDEDIMELLW QNGQVVVQSQ NQRSAGNKKS 60 ETMPSTAGRE IRSGVIDEET TPSNLFMQED EMVSWLHYPS DDNSLDLYLH NNDIPYPVLP 120 SSSSAPATTL PSSLPPPPPP LVTVPPTRPP IPPLNRVDEE PSQPKFANFL HFSRSNKRGL 180 AGSGPSSSKQ MSQAITQSTV VESNIGCRGS MSSFGGAGTS SAGTGREPET CDVSASSSPG 240 TGGSGASASV EPSSHKPPPA TDDRKRKGRD TDDTECYSED LEFEYHDPKK KSRGSASSTK 300 RSRAAEVHNL SERRRRDRIN EKMKALQELI PRCNKSDKAS MLDEAIEYLK SLQMQVQMMS 360 MGYNMVPMMF PGVQRYMPTM PAMGMGMGMG MGMGMDHIGM NRGMVPYPSV LPGPQMPNSA 420 AAHMGQRFPV PRFQMAQVPI MGPGTGEAAN PSDPMMNSFP TQNANQPRVP FLDPYQQCLG 480 LPQTQLAQQQ QQQQNQTGMA AVTSKPSSSK DVRYPQRHPT G

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence

MNHCVPDFET DDDYFFSASA NSKRHKKSAM GDEDIMELLW QNGQVVVQSQ NQRSAGNKKS  60
ETMPSTAGRE IRSGVIDEET TPSNLFMQED EMVSWLHYPS DDNSLDLYLH NNDIPYPVLP  120
SSSSAPATTL PSSLPPPPPP LVTVPPTRPP IPPLNRVDEE PSQPKFANFL HFSRSNKRGL  180
AGSGPSSSKQ MSQAITQSTV VESNIGCRGS MSSFGGAGTS SAGTGREPET CDVSASSSPG  240
TGGSGASASV EPSSHKPPPA TDDRKRKGRD TDDTECYSED LEFEYHDPKK KSRGSASSTK  300
RSRAAEVHNL SERRRRDRIN EKMKALQELI PRCNKSDKAS MLDEAIEYLK SLQMQVQMMS  360
MGYNMVPMMF PGVQRYMPTM PAMGMGMGMG MGMGMDHIGM NRGMVPYPSV LPGPQMPNSA  420
AAHMGQRFPV PRFQMAQVPI MGPGTGEAAN PSDPMMNSFP TQNANQPRVP FLDPYQQCLG  480
LPQTQLAQQQ QQQQNQTGMA AVTSKPSSSK DVRYPQRHPT G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	291	RKRKGRDTDDTECYSEDLEFEYHDPKKK
2	312	317	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	1e-43	bHLH family protein