PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980754.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 429aa MW: 47357.9 Da PI: 5.1396

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980754.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.9	4.7e-33	230	284	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fvea ++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+ XP_024980754.1 230 KPRMRWTPELHEAFVEAANKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 284 79****************************************************8 PP
2	Myb_DNA-binding	52.3	1.3e-16	232	283	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e +v+a ++lGg t+k + + m +g+t +++ks++qky+ XP_024980754.1 232 RMRWTPELHEAFVEAANKLGGSeraTPKGVLKLMKvEGLTIYHVKSHLQKYR 283 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MEAEPALSIQ RSGGRQLSNH GGATAALSSS FPIHRTNLDE KLPKLLDSQQ SSTNGTVGHI 60 FSSSSGMSSH LHLSSVSPDE TCSKKAPFVT TQSLGVLRST AFRQYMKENN SSSWCTDSLS 120 DFLDYPENIP IESSNLEHND SGLMPPEDIG KPNDWQDWAD QLITEDDAIT PNWNEILVDA 180 NVDDPEPKMA FHVGRSSTNL LKVKNLVPAS PGEACAPLTP SSCGSGSQSK PRMRWTPELH 240 EAFVEAANKL GGSERATPKG VLKLMKVEGL TIYHVKSHLQ KYRTARYKPE PSSEGSSEKK 300 PTPMQDLSSF DLKTSSEITE ALRLQVEVQK KLHEQLEIQR NLQMRIEEQG RYLQMIFEKQ 360 CKFGIDQLKA SSCTLEKSEA EMTNEISSSP TNTETKPDPI TVEPSIEPEP LESQPSKRAK 420 LNESSIESS

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MEAEPALSIQ RSGGRQLSNH GGATAALSSS FPIHRTNLDE KLPKLLDSQQ SSTNGTVGHI  60
FSSSSGMSSH LHLSSVSPDE TCSKKAPFVT TQSLGVLRST AFRQYMKENN SSSWCTDSLS  120
DFLDYPENIP IESSNLEHND SGLMPPEDIG KPNDWQDWAD QLITEDDAIT PNWNEILVDA  180
NVDDPEPKMA FHVGRSSTNL LKVKNLVPAS PGEACAPLTP SSCGSGSQSK PRMRWTPELH  240
EAFVEAANKL GGSERATPKG VLKLMKVEGL TIYHVKSHLQ KYRTARYKPE PSSEGSSEKK  300
PTPMQDLSSF DLKTSSEITE ALRLQVEVQK KLHEQLEIQR NLQMRIEEQG RYLQMIFEKQ  360
CKFGIDQLKA SSCTLEKSEA EMTNEISSSP TNTETKPDPI TVEPSIEPEP LESQPSKRAK  420
LNESSIESS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	2e-84	G2-like family protein