PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980712.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 289aa    MW: 32220.4 Da    PI: 4.964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980712.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.8e-10140187455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++sLq
  XP_024980712.1 140 SHSLAERARREKINARMKLLQELVPGC----NKIAGTAMVLDEIINHVQSLQ 187
                     8**************************....899*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MSLESFQFVD EEIHNLMSAD PPVKTGNSFT ALLELPPNQA VKLLHSPEES TPNVFASVCS  60
VMEIENSPNS SRDNFDLVKL EPVESGSMHN SSLIFSDPII SKSTKRKDRE KKMKSSATEI  120
DGEKLPYVHV RARRGEATDS HSLAERARRE KINARMKLLQ ELVPGCNKIA GTAMVLDEII  180
NHVQSLQLQV ELLSMKLAAV YPTIGLNVDS LFPSESGSPM DYNFTGMVSQ SWGLDEQAKV  240
NTQPVWYHDE INTLMTPENS LLSYDCSGNL GKSRIDFFNV DERSNVRLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.25e-58bHLH family protein