PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980696.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 368aa    MW: 40507.2 Da    PI: 6.9739
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980696.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1211.4e-37531572112
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssa 82 
                     +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++              +        + +s s a
  XP_024980696.1  53 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAELpawkptattnattaT--------TTNSTSIA 139
                     79**************************************************************555544333222210........11111111 PP

             TCP  83 snsssgkaaksaakskksqksaasalnlak 112
                     ++++++            ++++a++++l++
  XP_024980696.1 140 DFEQNP------------DQQNANHHQLSH 157
                     111111............111111222222 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MGESYQYHNQ QQLHQQQQQQ AATGSSRLGL RSSGGRGGGE IVEVQGGHIV RSTGRKDRHS  60
KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GYDRPSKAVD WLIKKAKTAI DELAELPAWK  120
PTATTNATTA TTTNSTSIAD FEQNPDQQNA NHHQLSHFEQ HPDDNIVDNQ MGMQFHQNFQ  180
PPADLLSRTS SRSQDLRLSL QSFQDPILQN HHQTEQNNNI YFDGSGWPDN QSGGFQRMVA  240
WGGVGGGDAV SAGFVFSSQP SPATPFLQPL FGQTTNNQLF NNNSQRGPLQ SSNPPSFRAW  300
IDPPPPFTGV AIDQQPTLAF HHPSSMSGFA SGLGRFSGFR IPARIQGEEE EHDGISDKPS  360
SASSDSRH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.21e-49TCP family protein