PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980657.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 203aa MW: 23717.9 Da PI: 8.2004

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980657.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.3	3.9e-41	33	132	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaC+++rrkCa+dC+lapyfp++++++f+n+hklFG+sn++k++++l++ ++++am++++y+A++ra+dPv G++++i++lq+q++ + ++l+ XP_024980657.1 33 ACAACRYQRRKCAPDCILAPYFPHDRQRQFQNAHKLFGVSNITKIIRHLDQPQKDEAMRTIIYQADVRAQDPVGGCYRIIRELQRQIDVSCSDLE 127 7**************************************************************************************99999988 PP DUF260 96 llkee 100 + ++ XP_024980657.1 128 IVLQQ 132 87665 PP

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence
MTNHNHHHHR LIHHHNHHLL PPHTTRSTST IQACAACRYQ RRKCAPDCIL APYFPHDRQR 60 QFQNAHKLFG VSNITKIIRH LDQPQKDEAM RTIIYQADVR AQDPVGGCYR IIRELQRQID 120 VSCSDLEIVL QQLAFCRTLS VQNHTHLNHD QIVIDEVNCD IHVVNNSDDP VAGDERRRHS 180 LDFDLRNYLC TKKNVKIMSD ILL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-54	LBD family protein