PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980644.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 639aa MW: 69265.8 Da PI: 6.5443

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980644.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.9	2.8e-16	429	475	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq XP_024980644.1 429 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 475 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence
MPLSEFYRSV NGKNESPQQK ASDISYIPND EFVELIWEKG QIMMQGQSSK TRKTPVSSNF 60 QFHTPKFQEK EGLLDVALPG TCVEMGLNQD DDMVPWLNYP LDDYCSDLLP EISGVTVSEP 120 PPPVNIGFNV IDKRGCCNKD SHVNTHNISL RHGVGLDQSN ASRISSSSRT SHLFSWSLDQ 180 VHIPDPCVRS GVSDIGSSKC RNKPHNVIHR DPVQIQGSSG RPEKLVQKQD SLPPSSTSGL 240 LNFSHFSRPA AMARANLLQN SGLLADSASC GLDIMKNNEH HASLDHGPQK EIGVPSQPSL 300 DSAKVASNPF ASKPLEEPHC VEKSCPDHKE DATTGNEKSP NVVLDSNPPK GGPETEKSIE 360 PVGASSSVCS GNSAERASND LTKNSKRKSI DTEDYECQSQ DIEEESLGTK TAATSRGGSG 420 SKRSRAAEVH NLSERRRRDR INEKMRALQE LIPNCNKVDK ASMLDEAIEY LKTLQLQVQI 480 MSMGTGLCMP SMMFPTGMQH MHPAHFSPMG IGMGMGMGMG YGMGMAEMNG GPPHMFPFPP 540 TTLGSRHPVP SPPVSGLGSC QGIPRSSFQV YGQGMPMLIS QPPMPGFPMN PAVRQTRAQV 600 EIPHLASTSK DKNPQTSSQT SEDKKDPVQE AGCSTAGVD

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence

MPLSEFYRSV NGKNESPQQK ASDISYIPND EFVELIWEKG QIMMQGQSSK TRKTPVSSNF  60
QFHTPKFQEK EGLLDVALPG TCVEMGLNQD DDMVPWLNYP LDDYCSDLLP EISGVTVSEP  120
PPPVNIGFNV IDKRGCCNKD SHVNTHNISL RHGVGLDQSN ASRISSSSRT SHLFSWSLDQ  180
VHIPDPCVRS GVSDIGSSKC RNKPHNVIHR DPVQIQGSSG RPEKLVQKQD SLPPSSTSGL  240
LNFSHFSRPA AMARANLLQN SGLLADSASC GLDIMKNNEH HASLDHGPQK EIGVPSQPSL  300
DSAKVASNPF ASKPLEEPHC VEKSCPDHKE DATTGNEKSP NVVLDSNPPK GGPETEKSIE  360
PVGASSSVCS GNSAERASND LTKNSKRKSI DTEDYECQSQ DIEEESLGTK TAATSRGGSG  420
SKRSRAAEVH NLSERRRRDR INEKMRALQE LIPNCNKVDK ASMLDEAIEY LKTLQLQVQI  480
MSMGTGLCMP SMMFPTGMQH MHPAHFSPMG IGMGMGMGMG YGMGMAEMNG GPPHMFPFPP  540
TTLGSRHPVP SPPVSGLGSC QGIPRSSFQV YGQGMPMLIS QPPMPGFPMN PAVRQTRAQV  600
EIPHLASTSK DKNPQTSSQT SEDKKDPVQE AGCSTAGVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	434	439	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	5e-59	bHLH family protein