PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980518.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

DBB

Protein Properties

Length: 287aa MW: 32496.9 Da PI: 6.1808

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980518.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.2	2.9e-07	4	34	5	35
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ +e+ke+ +C+ ++ lC+ C H+ XP_024980518.1 4 QCDMCEQKEAAVYCTADEASLCHACDRRVHH 34 7*************************99974 PP
2	zf-B_box	30.4	7.8e-10	53	91	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 e+++C+ ++e ++ lfC++++ lC++C ++H+ Ht XP_024980518.1 53 EPPRCDICQERRAFLFCKEDRAILCRECDISIHRAneHT 91 789******************************767865 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MKIQCDMCEQ KEAAVYCTAD EASLCHACDR RVHHANKLAN KHLRFSLNPS SDEPPRCDIC 60 QERRAFLFCK EDRAILCREC DISIHRANEH TQYHDRFLLA GVKLSDSSSC YDKSSDQALC 120 SSNSNGYSEI DSRKSSIVSE DQNARSAKYF TSVNDHCDGA SREEGASMAA SSISQYLMET 180 LPGWHVEEFL DPSASHPYGF YDGYDSGTLP FMTHDSNNSR DLWSEDLGIF LNSSSSSSSS 240 MDHQISKTRS LSKRVFLDEV ESLKKLNKDQ HTFKPSSIKR PRQDQLW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	1e-64	DBB family protein