PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980437.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NZZ/SPL

Protein Properties

Length: 442aa MW: 46754.8 Da PI: 8.3015

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980437.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	20.5	7.6e-07	39	90	53	102
NOZZLE 53 qqkqkkptlrgmgvaklerfiieeekkkl..vvatvgdtssvaaisntatrl 102 + k kk rgmgva+le+ i ee++kk v +++ s ++sn at + XP_024980437.1 39 KLKHKKVPQRGMGVAQLEKIISEEQQKKDvsVLTSNSIISPSNSSSNLATTI 90 456788889*************998766523444555567778888888865 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MAQDEHTSRC SNSSSGGAGG GGGGGGGGAG GSSHRSSKKL KHKKVPQRGM GVAQLEKIIS 60 EEQQKKDVSV LTSNSIISPS NSSSNLATTI QKVPNFRPSP ISSSSIPLPP PLPPNHHPLI 120 SKTDAVNPIS ASTFSKPASM SSGGGGGVGG SNWCRLWSDG DYSFEGEKQN QSQNHNQNHG 180 LDHPRYTAAF PANLGGLPYE SNPPIWPPPP PNLMMQRSQH LQQPCSSSMV NVSSGTSSSS 240 SSSVMNLQME PPSNQSYCGN NYQPLWSEEE KMVGMKRPYP FSLENVPIPS FHCKFPSAYI 300 PSIPRSDESA SCSNGGTVSI ESAHPIFREP PLSSGAINDT VTKKFIDENQ GLTRDFLKLA 360 PPQPHSSSKE KLHSSPCIGE QTQFETLSPH KGQSKGSTHF SGPGGSNPQP FLSFFPAAKT 420 PMGQPGNSNG EAGESVDLNL KL

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MAQDEHTSRC SNSSSGGAGG GGGGGGGGAG GSSHRSSKKL KHKKVPQRGM GVAQLEKIIS  60
EEQQKKDVSV LTSNSIISPS NSSSNLATTI QKVPNFRPSP ISSSSIPLPP PLPPNHHPLI  120
SKTDAVNPIS ASTFSKPASM SSGGGGGVGG SNWCRLWSDG DYSFEGEKQN QSQNHNQNHG  180
LDHPRYTAAF PANLGGLPYE SNPPIWPPPP PNLMMQRSQH LQQPCSSSMV NVSSGTSSSS  240
SSSVMNLQME PPSNQSYCGN NYQPLWSEEE KMVGMKRPYP FSLENVPIPS FHCKFPSAYI  300
PSIPRSDESA SCSNGGTVSI ESAHPIFREP PLSSGAINDT VTKKFIDENQ GLTRDFLKLA  360
PPQPHSSSKE KLHSSPCIGE QTQFETLSPH KGQSKGSTHF SGPGGSNPQP FLSFFPAAKT  420
PMGQPGNSNG EAGESVDLNL KL