PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980374.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HSF
Protein Properties Length: 311aa    MW: 35356.1 Da    PI: 7.0796
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980374.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1025.2e-32101012102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k+y++++d++l+ +i+w    nsf+v+++ +f++++Lp yFkh+nf+SF+RQLn+YgF+kv+ ++         weF+ ++F +g+++ll++
  XP_024980374.1  10 FVLKTYQMVNDPSLDGFIRWGIADNSFIVVQPLDFSQRLLPAYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFASEWFLRGQTHLLKN 95 
                     9********************888*****************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     + rkk+
  XP_024980374.1  96 LGRKKQ 101
                     ***997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MESNDIIAPF VLKTYQMVND PSLDGFIRWG IADNSFIVVQ PLDFSQRLLP AYFKHNNFSS  60
FIRQLNTYGF RKVDPDRWEF ASEWFLRGQT HLLKNLGRKK QIHNRNNFMR SEEDDEVEMA  120
VEIARLNQEQ KALERELIGM NKRLEATERR PEQMMALLHK VAEDPEILPR MMLEKDQRSK  180
RLIHKKRQRI LIPPSPLPSP SSRVKNKEDD ECRILGGWTA SSPEGYYGNE PFWQSSPSPD  240
TISMAWPRTK AVVGGGGLNM ESGPVNGISM YGNYTDGGGG GFNMDYSGGV SPEPDVRPPP  300
AYPFSLLGGG F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.19e-48HSF family protein