PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024980323.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 27335.6 Da PI: 9.7656 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.3 | 1.5e-07 | 23 | 70 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT e + + a + + ++ +W+ +a+ ++ g+++++++ + + XP_024980323.1 23 SKWTNEQNKWFESALAIFDTEtpdRWSNVAALVP-GKSEYDVRKQYEVL 70 58********************************.********999765 PP | |||||||
2 | Myb_DNA-binding | 41.7 | 2.6e-13 | 122 | 166 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + + +G+g+W+ I+r + ++t+ q+ s+ qky XP_024980323.1 122 PWTEEEHRRFLMGLQVHGKGDWRNISRNFVMTKTPTQVASHAQKY 166 7*****************************99************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
METSSQSLHL LSSNNMMQEI KSSKWTNEQN KWFESALAIF DTETPDRWSN VAALVPGKSE 60 YDVRKQYEVL KADINDIEAG LIPVPGYFAF KSELVEDRGF YSFGNRLLRS RSFDQERRKG 120 IPWTEEEHRR FLMGLQVHGK GDWRNISRNF VMTKTPTQVA SHAQKYYARQ HSDGKEKRRP 180 SIHDITTVHL PENANFSGER EKFSPLVSTP NNRNPNIRVY NSGLYFQPTR YQVQG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05790.1 | 2e-76 | MYB family protein |