PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024980320.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 552aa    MW: 61738.6 Da    PI: 5.2251
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024980320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS255.22.4e-781695442374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfsh 95 
                     ++lL  cA a++sg+ +++q+lL  l+elasp+gd++ Rla++ ++AL ++l++s+++  k l+p  + ++   +    +l  f+++ P++++ +
  XP_024980320.1 169 EQLLNPCAAAITSGNVTRVQHLLFVLHELASPTGDANYRLASHGLQALLHHLSSSTNSPTKVLTPAISFDTAtPKFFQRSLINFNDINPWFTIPF 263
                     689***************************************************99999999966655543314444444444************ PP

            GRAS  96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg......skeeleetgerLakfAeelgvpfef 178
                      +aN+aIl+ ++++     + +Hi+D+++s+G+QWp+Ll+aL+sRp ++pp +R+T+v +  ++      +     + ++ + +fA+ l++++++
  XP_024980320.1 264 NIANNAILQVLSEHdhgsrRNLHILDIGVSHGFQWPTLLEALSSRPgGPPPLVRVTVVPPTLENhqlpfaNCPPGYNFASYILRFAKDLNINLQI 358
                     ***********99878877889************************55566*******9865556788887788899999*************** PP

            GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                     n l    l++l+++ ++ +p+E+l+V+ +++lh+l    ++ +++r+e+Lkl++s++P+ v++ ++++d++ ++F ++f+++l+y ++++ds+++
  XP_024980320.1 359 NRLDNCPLQNLNTHIINSSPDETLIVCAQFRLHYLN---HTKPDTRTEFLKLMRSMEPQGVILNDNDMDCSCSNFDAGFSQSLDYLWSFLDSTSV 450
                     **8777*****************************8...55556677**********************************************99 PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367
                      +    + r + Er+l++ e+ +++ +  ++    +e++ekW er++ +GF + ++se++++qa++ll+k++  +++rvee++gs+ l Wk++++
  XP_024980320.1 451 AF----KGREMEERKLIEGEAAKALINTFEM----NEKKEKWGERMRGVGFLENAFSEDVVDQARALLKKYDtHWEMRVEEKDGSVGLWWKGQSV 537
                     97....8999999999999999999988777....9999*********************************999******************** PP

            GRAS 368 vsvSaWr 374
                      ++S W+
  XP_024980320.1 538 SFCSLWK 544
                     ******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    
MIKQDSLFLP SLPLNTPPMS ETMFFGEPDP DLNSGHILDW LEDSIPYLPS LLDDLYGSTD  60
IINDPWWVPT QELEQDLIDA NNTSTSNSVE NLTSSVSSPT ITAPTDLLIL SNEPQLPVSD  120
LSKKRKAPED HMPQPAPQGK KSTGNKKGTG KSTKDNCING NNKEGRWAEQ LLNPCAAAIT  180
SGNVTRVQHL LFVLHELASP TGDANYRLAS HGLQALLHHL SSSTNSPTKV LTPAISFDTA  240
TPKFFQRSLI NFNDINPWFT IPFNIANNAI LQVLSEHDHG SRRNLHILDI GVSHGFQWPT  300
LLEALSSRPG GPPPLVRVTV VPPTLENHQL PFANCPPGYN FASYILRFAK DLNINLQINR  360
LDNCPLQNLN THIINSSPDE TLIVCAQFRL HYLNHTKPDT RTEFLKLMRS MEPQGVILND  420
NDMDCSCSNF DAGFSQSLDY LWSFLDSTSV AFKGREMEER KLIEGEAAKA LINTFEMNEK  480
KEKWGERMRG VGFLENAFSE DVVDQARALL KKYDTHWEMR VEEKDGSVGL WWKGQSVSFC  540
SLWKIDAKTS DS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-143GRAS family protein