PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980312.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HSF

Protein Properties

Length: 404aa MW: 46543.5 Da PI: 5.0201

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980312.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.1	3.2e-34	104	196	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Flkk++e+++d++++++isws++++sf+++d+++f++++Lp+ Fkh+nf+SFvRQLn+Y Fkk++ ++ weF+++ F+kgkk+ll++ XP_024980312.1 104 FLKKTFEMVDDPRTDSIISWSDSKKSFILWDPHKFSTDLLPQRFKHNNFSSFVRQLNTYRFKKIDPDR---------WEFANELFQKGKKHLLRD 189 9**************************************************************999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 ikr++++ XP_024980312.1 190 IKRRTNQ 196 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MQGGTETTIR VELDATAGGG GGGEDFLKIK EEPMLVLDSD DFVNTGGGGL TEDQVVLKIK 60 EEPMLVYDQD DFISGGGGGC LSGSSPVWVP KPIEGLRDGG PPPFLKKTFE MVDDPRTDSI 120 ISWSDSKKSF ILWDPHKFST DLLPQRFKHN NFSSFVRQLN TYRFKKIDPD RWEFANELFQ 180 KGKKHLLRDI KRRTNQTQIT QKQLELEPPP PSVHQTNSSI ESELKSLRKD RAALRQEILK 240 MKQQQENTEK HLEIVQERMR RTEFKQQRLL VFMSKAFRNP VFVQLLQHLM QKQEVGSVET 300 CRKRRKLEQM INTADGYELN QVQEVWDMIE SDGYTVFSSD ESVSPLQDQK KGEKSGLNNQ 360 DYSSENFILW EKLMEDELIF GDESGKINQS ETYLQEWEEL IPKV

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MQGGTETTIR VELDATAGGG GGGEDFLKIK EEPMLVLDSD DFVNTGGGGL TEDQVVLKIK  60
EEPMLVYDQD DFISGGGGGC LSGSSPVWVP KPIEGLRDGG PPPFLKKTFE MVDDPRTDSI  120
ISWSDSKKSF ILWDPHKFST DLLPQRFKHN NFSSFVRQLN TYRFKKIDPD RWEFANELFQ  180
KGKKHLLRDI KRRTNQTQIT QKQLELEPPP PSVHQTNSSI ESELKSLRKD RAALRQEILK  240
MKQQQENTEK HLEIVQERMR RTEFKQQRLL VFMSKAFRNP VFVQLLQHLM QKQEVGSVET  300
CRKRRKLEQM INTADGYELN QVQEVWDMIE SDGYTVFSSD ESVSPLQDQK KGEKSGLNNQ  360
DYSSENFILW EKLMEDELIF GDESGKINQS ETYLQEWEEL IPKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	4e-61	HSF family protein