PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024980252.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | DBB | ||||||||
Protein Properties | Length: 210aa MW: 22889.7 Da PI: 4.6153 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19 | 2.9e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC C ++ H H++vpl XP_024980252.1 4 QCNVCEVAEATVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47 7******99*********************66899999999986 PP | |||||||
2 | zf-B_box | 30.9 | 5.7e-10 | 52 | 94 | 1 | 37 |
zf-B_box 1 seerkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 ++++kC+ ++e +fC +++ llC++C +++H + H XP_024980252.1 52 NQMPKCDICQETDGYFFCLEDRALLCRKCDVAIH-SlndlvssH 94 689********99*********************.434455555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MKIQCNVCEV AEATVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSNS NNQMPKCDIC 60 QETDGYFFCL EDRALLCRKC DVAIHSLNDL VSSHQRFLLT GVKIGVETGD LIASSVKSSA 120 CEKIPETAES LCLPTSAPES ANSPYNEVLP TQAAGSGDCG SPKLPFGGGS SIQQWQFDEF 180 FGLNDFNQNY NHVDYGSSRW QSFLVTSTNF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 1e-73 | DBB family protein |