PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980251.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

DBB

Protein Properties

Length: 285aa MW: 31154.8 Da PI: 4.9981

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980251.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.3	4.7e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC C ++ H H++vpl XP_024980251.1 4 QCNVCEVAEATVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47 7****99*******************66899999999986 PP
2	zf-B_box	30.2	9.3e-10	52	94	1	37
zf-B_box 1 seerkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 ++++kC+ ++e +fC +++ llC++C +++H + H XP_024980251.1 52 NQMPKCDICQETDGYFFCLEDRALLCRKCDVAIH-SlndlvssH 94 689******99*******************.434455555 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MKIQCNVCEV AEATVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSNS NNQMPKCDIC 60 QETDGYFFCL EDRALLCRKC DVAIHSLNDL VSSHQRFLLT GVKIGVETGD LIASSVKSSA 120 CEKIPETAES LCLPTSAPES ANSPYNEVLP TQAAGSGDCG SPKLPFGGGS SIQQWQFDEF 180 FGLNDFNQNY NHVDYGSSRG DSNKLGDSDC SSSILRALEV ELDDEDCLSW VPDSSWAVPQ 240 ICSPPTASGL CWSKQHHRHQ INSSAAFVPD VSYHSQQTLK RKRHF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	2e-91	DBB family protein