PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980158.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 676aa MW: 77790.7 Da PI: 7.854

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980158.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.3	3.9e-21	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++ +++k +r+r+++r+gC+a ++++k++ +w+vt ++++HnHel XP_024980158.1 63 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTLNENKPQRNRKSSRCGCQAYMRISKTTelgAPEWRVTGFSNHHNHELL 156 6************9998877356667999***********9999*****************99888889***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MMSEDADQLL VVYDDHSDQR SLSLDETSST EESPDETKLS LETTNDAVPY IGQRFATHDA 60 AYEFYSEFAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTLN ENKPQRNRKS 120 SRCGCQAYMR ISKTTELGAP EWRVTGFSNH HNHELLEPNQ VRFLPAYRTI SDIDKNRILM 180 FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKVDLEDESI DLLRMCRNIK 240 DKDHNFQFEF KLDPNGRLEN IAWSYASSIQ SYEVFGDAVV FDTTHRLNAF DMPLGIWVGV 300 NNYGMPCFFG CALLREENLK SYSWALKAFL GFMNGKVPQT ILTDQTLCVR EAIAMEMPAA 360 KHAYCIWLIV AKFPSWFNAV LGERYNEWKG EFYRLYNLEA IEDFEMGWRD MVNSFGLHTN 420 RHINTLFASR TLWALPYLRS HFFAGMTTTG HSKAINAFIQ RFLSAQTRLA HFIEQVAVAV 480 DFKDQAGEQQ TMQQNLQNIC LKTGAPMESH AASILTPFAF SKLQEQLVMA AHYASFQLED 540 GFLVRHHTKL EGGRKVYWVP REGIISCSCH HFEFSGILCR HALRVLSTGN CFQIPERYMP 600 LRWRRINTSA KLLQNTLSDH AERVQLLQGM VSNLVTESAK SKDRLDIAVE HVSILLSRIR 660 EHPVPSARYA RTDLFT

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MMSEDADQLL VVYDDHSDQR SLSLDETSST EESPDETKLS LETTNDAVPY IGQRFATHDA  60
AYEFYSEFAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPVKTLN ENKPQRNRKS  120
SRCGCQAYMR ISKTTELGAP EWRVTGFSNH HNHELLEPNQ VRFLPAYRTI SDIDKNRILM  180
FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKVDLEDESI DLLRMCRNIK  240
DKDHNFQFEF KLDPNGRLEN IAWSYASSIQ SYEVFGDAVV FDTTHRLNAF DMPLGIWVGV  300
NNYGMPCFFG CALLREENLK SYSWALKAFL GFMNGKVPQT ILTDQTLCVR EAIAMEMPAA  360
KHAYCIWLIV AKFPSWFNAV LGERYNEWKG EFYRLYNLEA IEDFEMGWRD MVNSFGLHTN  420
RHINTLFASR TLWALPYLRS HFFAGMTTTG HSKAINAFIQ RFLSAQTRLA HFIEQVAVAV  480
DFKDQAGEQQ TMQQNLQNIC LKTGAPMESH AASILTPFAF SKLQEQLVMA AHYASFQLED  540
GFLVRHHTKL EGGRKVYWVP REGIISCSCH HFEFSGILCR HALRVLSTGN CFQIPERYMP  600
LRWRRINTSA KLLQNTLSDH AERVQLLQGM VSNLVTESAK SKDRLDIAVE HVSILLSRIR  660
EHPVPSARYA RTDLFT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein