PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024980131.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

STAT

Protein Properties

Length: 704aa MW: 78503.3 Da PI: 6.2694

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024980131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	197.9	9.9e-62	221	343	1	122
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk. 94 ldv l++a+g++v+k++ev+asL yad+g+ vek+ddaeapLL+sydG+ef+s drp+kl++GrasfklkisqLsskcdnrLfrikf+ipk+ + XP_024980131.1 221 LDVNLMDAFGHSVNKEMEVIASLTYADNGAYVEKPDDAEAPLLTSYDGIEFASWDRPSKLINGRASFKLKISQLSSKCDNRLFRIKFNIPKMGRr 315 79****************************************************************************************877 PP STAT 95 ypfleavskpirCisrsrntrsssltkk 122 ypfle++s++irCisr+rntr+s+l++k XP_024980131.1 316 YPFLEVFSRSIRCISRNRNTRPSTLIWK 343 *********************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MGSNAVEDGG YSSLNDFKLE IVNQEGDVNG SFSLCFWLYL PADSSPFPST LLRQHHSDSS 60 SHAPFLVLTA NKEMVVYPIH FVPQEAPIPS DGTEIPSAKT KIEFEFPLNK WVHIGCEMST 120 DIIRLHINGE IVGETCISLT FDSSRKVSLV GLGANEDDLV DGFVHGVEIF PITSSIKDYF 180 VKDPPVQLHV DSLSATDIEE DNDGVWSVVG GKASCRRNFS LDVNLMDAFG HSVNKEMEVI 240 ASLTYADNGA YVEKPDDAEA PLLTSYDGIE FASWDRPSKL INGRASFKLK ISQLSSKCDN 300 RLFRIKFNIP KMGRRYPFLE VFSRSIRCIS RNRNTRPSTL IWKRPTSAMH SGSGTSWLDG 360 GSVEPVHNIV HEAKPSPSSK RVKLGQGNPF VNLSSNTSFK QGDHEGNKQD DRLNGRISEG 420 RQEMRDGTTH NSSSDSDSSE ATNSCKSRSS NGSSVSDLTV FKYCLGTVTE KSLLLKDLAN 480 SASEQDLMEF AVQVSQLSGC LHHRNQIRIS KRMIEEGTNA WNLISRNNHN GLWDNMILVI 540 SELFMKVARC RNRFLTQQDF EVLRRIGGCQ ESVSRENFEK LWCWLYPVAF GLSQNGLNEM 600 WDSRWIEGLV TKEEAESSLQ GPGGGLVDPG TFVLRFPTSR SWPHPDAGNL IVTYVGSDFA 660 IHHRLLSLDF FYSCGGNGKS LKEMLLEERE LSRLGRITRS LRLV

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MGSNAVEDGG YSSLNDFKLE IVNQEGDVNG SFSLCFWLYL PADSSPFPST LLRQHHSDSS  60
SHAPFLVLTA NKEMVVYPIH FVPQEAPIPS DGTEIPSAKT KIEFEFPLNK WVHIGCEMST  120
DIIRLHINGE IVGETCISLT FDSSRKVSLV GLGANEDDLV DGFVHGVEIF PITSSIKDYF  180
VKDPPVQLHV DSLSATDIEE DNDGVWSVVG GKASCRRNFS LDVNLMDAFG HSVNKEMEVI  240
ASLTYADNGA YVEKPDDAEA PLLTSYDGIE FASWDRPSKL INGRASFKLK ISQLSSKCDN  300
RLFRIKFNIP KMGRRYPFLE VFSRSIRCIS RNRNTRPSTL IWKRPTSAMH SGSGTSWLDG  360
GSVEPVHNIV HEAKPSPSSK RVKLGQGNPF VNLSSNTSFK QGDHEGNKQD DRLNGRISEG  420
RQEMRDGTTH NSSSDSDSSE ATNSCKSRSS NGSSVSDLTV FKYCLGTVTE KSLLLKDLAN  480
SASEQDLMEF AVQVSQLSGC LHHRNQIRIS KRMIEEGTNA WNLISRNNHN GLWDNMILVI  540
SELFMKVARC RNRFLTQQDF EVLRRIGGCQ ESVSRENFEK LWCWLYPVAF GLSQNGLNEM  600
WDSRWIEGLV TKEEAESSLQ GPGGGLVDPG TFVLRFPTSR SWPHPDAGNL IVTYVGSDFA  660
IHHRLLSLDF FYSCGGNGKS LKEMLLEERE LSRLGRITRS LRLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17040.1	0.0	STAT family protein