PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979996.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 365aa MW: 40294.1 Da PI: 6.8891

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979996.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92	4.5e-29	170	226	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK vkg++f rsYY+Ctsa+Cp++k+vers+ d++++ei Y +H+h+k XP_024979996.1 170 DGYNWRKYGQKLVKGNTFVRSYYKCTSANCPARKQVERSH-DGHITEINYLWKHEHPK 226 9*************************************.*************85 PP
2	WRKY	34.5	4.1e-11	344	365	1	22
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ++Dgy+WrKYGqK vkg+++pr XP_024979996.1 344 VNDGYRWRKYGQKLVKGNPNPR 365 58*******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MMDKPSDTLE LTNDTDSRNQ TSLSNRERNS ESIIVKELHD MHQRQSPDGG IHVSHSNQER 60 SSTSVILDKE SDSQNYRQDL HTGCAVSESD QEGSALPVVP KKVSNTSQQT PPGAGVPASK 120 PDQENAIVVL RPEKGLDKLP LRRNADSVSH ASHSDQGISF SKLPEKPTGD GYNWRKYGQK 180 LVKGNTFVRS YYKCTSANCP ARKQVERSHD GHITEINYLW KHEHPKPNTL QKGSGFVLPV 240 QSKGSDDPSL TTSEDHSSVH PATSHDPEAS ETDTLQLSVV PPSENSVEVA ASQSNEIKNE 300 VNNDISSDSK RQKRENSSIN EGVSTKTNCE PRVVVQITSA VDIVNDGYRW RKYGQKLVKG 360 NPNPR

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MMDKPSDTLE LTNDTDSRNQ TSLSNRERNS ESIIVKELHD MHQRQSPDGG IHVSHSNQER  60
SSTSVILDKE SDSQNYRQDL HTGCAVSESD QEGSALPVVP KKVSNTSQQT PPGAGVPASK  120
PDQENAIVVL RPEKGLDKLP LRRNADSVSH ASHSDQGISF SKLPEKPTGD GYNWRKYGQK  180
LVKGNTFVRS YYKCTSANCP ARKQVERSHD GHITEINYLW KHEHPKPNTL QKGSGFVLPV  240
QSKGSDDPSL TTSEDHSSVH PATSHDPEAS ETDTLQLSVV PPSENSVEVA ASQSNEIKNE  300
VNNDISSDSK RQKRENSSIN EGVSTKTNCE PRVVVQITSA VDIVNDGYRW RKYGQKLVKG  360
NPNPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26440.1	5e-43	WRKY family protein