PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979918.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CO-like

Protein Properties

Length: 379aa MW: 41870.4 Da PI: 4.8289

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979918.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.5	4.1e-06	4	35	5	36
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 +C+ ++e + +C+++ +lC +C + H+ XP_024979918.1 4 NCDYCGEARSMVYCRSDAAYLCLSCDRNVHSA 35 6***************************9954 PP
2	zf-B_box	26.2	1.6e-08	47	90	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 +C+ ++++++ C d + lC++C +H+g H++++ XP_024979918.1 47 VCDVCNSQPALVRCVDEKASLCQNCDWVGHNGaslgastHSRQT 90 8*****************************98888888888765 PP
3	CCT	56.6	9.3e-20	322	364	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R a+lRYkeK+k RkFeK++rY++RKa+A+ R+RvKGrF k+ XP_024979918.1 322 RSDAVLRYKEKKKMRKFEKRVRYATRKARADVRKRVKGRFIKA 364 889*************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MGYNCDYCGE ARSMVYCRSD AAYLCLSCDR NVHSANPLSK RHMRTLVCDV CNSQPALVRC 60 VDEKASLCQN CDWVGHNGAS LGASTHSRQT LNCYSGCPTA VELSSIWPFM SESCEQEMGS 120 MSIADNSQEP SENDNTQDSS MPVETSDLQI ENNSNDWMGS LLQDDNRSQD IYRQGKPLSS 180 SANKISCSGT KDSEKVADDG LYDDFTMDEV DMNIENYEEL FGVGHNDPKH LFAKDGIDSL 240 FGMRETTTKD SANAVEPACS NAASVDSLMS CKTEPNPCHA RQLSFSSLTG DSSGGEYQDC 300 GASLPMGEPP WCTPGPGSTT IRSDAVLRYK EKKKMRKFEK RVRYATRKAR ADVRKRVKGR 360 FIKAGDAYDY DPMSETRSF

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MGYNCDYCGE ARSMVYCRSD AAYLCLSCDR NVHSANPLSK RHMRTLVCDV CNSQPALVRC  60
VDEKASLCQN CDWVGHNGAS LGASTHSRQT LNCYSGCPTA VELSSIWPFM SESCEQEMGS  120
MSIADNSQEP SENDNTQDSS MPVETSDLQI ENNSNDWMGS LLQDDNRSQD IYRQGKPLSS  180
SANKISCSGT KDSEKVADDG LYDDFTMDEV DMNIENYEEL FGVGHNDPKH LFAKDGIDSL  240
FGMRETTTKD SANAVEPACS NAASVDSLMS CKTEPNPCHA RQLSFSSLTG DSSGGEYQDC  300
GASLPMGEPP WCTPGPGSTT IRSDAVLRYK EKKKMRKFEK RVRYATRKAR ADVRKRVKGR  360
FIKAGDAYDY DPMSETRSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-98	CO-like family protein