PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979885.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 221aa    MW: 24876 Da    PI: 5.3549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-13135182455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i+++++ L++l+P +    +k  +Ka+iL + + Y++ Lq
  XP_024979885.1 135 SHSLAERARREKIKKKMQDLQDLVPGC----NKITNKAAILDEIITYVQCLQ 182
                     8**************************....999***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MPEILQILHQ SPPSRHQMPP HLQRGLVNVE SQFNWLIDSA FPSPGIFDVT DHFQWSEFDG  60
SPFTDLSSSS IDELSKVTAI NDQNQSAKKR KLEFDVVEVK AEKHIDELEG DSKPKIDPKA  120
DYIHVRARRG QATDSHSLAE RARREKIKKK MQDLQDLVPG CNKITNKAAI LDEIITYVQC  180
LQREVEFLTM KLAASTTSVD FNSLPEQQQP DASGGELSLP A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188115KKRKLEFDVVEVKAEKHIDELEGDSKPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-35bHLH family protein