PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979803.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 469aa MW: 53035.9 Da PI: 6.9767

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979803.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.5	5.5e-36	50	192	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+Ptd+el+ e+L++kve+k+ + + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ XP_024979803.1 50 LPAGVKFDPTDQELI-EHLEAKVEAKNfkshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdl 139 799**********.99*****5554442...143333666646******.555666799**************73334555 PP NAM 80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_024979803.1 140 qggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 192 544778********.999*******5547999999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MNYSVDRRRM NNISSSDLID AKLEEHQLCG SKHCPGCGHR LEGKPDWVGL PAGVKFDPTD 60 QELIEHLEAK VEAKNFKSHP LIDEFIPTIE GEDGICYTHP EKLPGVTRDG LSRHFFHRPS 120 KAYTTGTRKR RKIQTECDLQ GGETRWHKTG KTRPVMVNGK QKGCKKILVL YTNFGKNRKP 180 EKTNWVMHQY HLGQHEEERE GELVVSKIFY QTQPRQCNWS ERASNNNVLS NVIPIEGANN 240 ETNRRESRSG SGSCSSSKEI NITATAPPTH NNMDELSAVS VGAVMSSYNP MDQMHHLKGV 300 DHFSFVPFRK SFDEVGTTGG EASTGREIGI TCEEHELQHH HMAHEQNPHQ HQMAAGGYNV 360 SRPTHPVSNL ISPPPPPHPL HHTSSIMLDE DSFHVSRIMD NFQQQHHHHK MGGGRSTSGL 420 EELIMGCTPS SSTDIKEESS ITNQHHQQEA DWLKYSTFWP DHPDTQDHH

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MNYSVDRRRM NNISSSDLID AKLEEHQLCG SKHCPGCGHR LEGKPDWVGL PAGVKFDPTD  60
QELIEHLEAK VEAKNFKSHP LIDEFIPTIE GEDGICYTHP EKLPGVTRDG LSRHFFHRPS  120
KAYTTGTRKR RKIQTECDLQ GGETRWHKTG KTRPVMVNGK QKGCKKILVL YTNFGKNRKP  180
EKTNWVMHQY HLGQHEEERE GELVVSKIFY QTQPRQCNWS ERASNNNVLS NVIPIEGANN  240
ETNRRESRSG SGSCSSSKEI NITATAPPTH NNMDELSAVS VGAVMSSYNP MDQMHHLKGV  300
DHFSFVPFRK SFDEVGTTGG EASTGREIGI TCEEHELQHH HMAHEQNPHQ HQMAAGGYNV  360
SRPTHPVSNL ISPPPPPHPL HHTSSIMLDE DSFHVSRIMD NFQQQHHHHK MGGGRSTSGL  420
EELIMGCTPS SSTDIKEESS ITNQHHQQEA DWLKYSTFWP DHPDTQDHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-170	NAC family protein