PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979782.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HRT-like

Protein Properties

Length: 406aa MW: 45215.4 Da PI: 9.9187

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979782.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	56.7	4.1e-18	282	312	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l++Gs+C+r+Pv gRKRC+ HKGm++ XP_024979782.1 282 TCGVALGHGSICTRPPVDGRKRCADHKGMKV 312 7****************************97 PP
2	HRT-like	57.8	1.8e-18	331	361	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l+dGs C+r Pv gRKRCeeHK mR+ XP_024979782.1 331 TCGVTLDDGSLCTRVPVLGRKRCEEHKAMRV 361 7*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
RGIAREARRS SLGRIVNSAV SEMSLLKRED CKRTKHDSAF SDWKILIGPS NWEDYLLNKE 60 GAERYRTQNL PNCSSCPGVY ELGIAVSLPR TEEKSSSRLG SKSIIPVYVG QADNVRTRLQ 120 RYGRDGAHLE NGWFNGEQDA HRVQGLFSGI FSQGFAIAYR WVPMNTKKDA KKTESELLKT 180 FDYAWNRGMN GERRPGDIHQ KLNAAASSAK RVPLLFKKFH VLQPKKVGVS IKRCDSNVLD 240 NGSSFYTKQT GTNFLPSVFK FSRTRPTLVS KECDTNNNDG NTCGVALGHG SICTRPPVDG 300 RKRCADHKGM KVNACVRPCS LTNTENILHL TCGVTLDDGS LCTRVPVLGR KRCEEHKAMR 360 VNSPVPIHFG RDVGADSLTC IAITLDGSSC RRKAGKESMF CWQHEQ

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

RGIAREARRS SLGRIVNSAV SEMSLLKRED CKRTKHDSAF SDWKILIGPS NWEDYLLNKE  60
GAERYRTQNL PNCSSCPGVY ELGIAVSLPR TEEKSSSRLG SKSIIPVYVG QADNVRTRLQ  120
RYGRDGAHLE NGWFNGEQDA HRVQGLFSGI FSQGFAIAYR WVPMNTKKDA KKTESELLKT  180
FDYAWNRGMN GERRPGDIHQ KLNAAASSAK RVPLLFKKFH VLQPKKVGVS IKRCDSNVLD  240
NGSSFYTKQT GTNFLPSVFK FSRTRPTLVS KECDTNNNDG NTCGVALGHG SICTRPPVDG  300
RKRCADHKGM KVNACVRPCS LTNTENILHL TCGVTLDDGS LCTRVPVLGR KRCEEHKAMR  360
VNSPVPIHFG RDVGADSLTC IAITLDGSSC RRKAGKESMF CWQHEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-90	HRT-like family protein