PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979577.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 401aa MW: 45040.2 Da PI: 5.9733

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979577.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.1e-10	210	257	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_024979577.1 210 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 257 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MNPQFKPKLH SGSTTGCDTS LLERQQARTK WQQNHAFFNG DDDDHHHHLQ NMFNSMPLTQ 60 QQFSGLIDDH PRLDEVKPDP GMQERWPDFG GGVYGDQLGY GYMNQNTLVN QTFLQGNSGS 120 VSVSVSPKKR KTDEGQSLQL VSEKEKRIKG CAEEGDSKIT HQYSNCDNKS SNNSKEASTN 180 TSSKEKSKVS EVQKPDYIHV RARRGQATDS HSLAERVRRE KISERMKYLQ DLVPGCNKIT 240 GKAGMLDEII NYVQSLQKQV EFLSMKLATV NPELDFNIDN VFMKEMFQSS TSEFPALGCS 300 PETANSAYFQ LSSLEQAVSC CGLDMGMNST EMALRRSISV PTSVPGTFMD SSCFNQIQPT 360 ATWDADLQNL YKMEFEQGTL IPFQSHQFTG LNEGSNLKME M

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MNPQFKPKLH SGSTTGCDTS LLERQQARTK WQQNHAFFNG DDDDHHHHLQ NMFNSMPLTQ  60
QQFSGLIDDH PRLDEVKPDP GMQERWPDFG GGVYGDQLGY GYMNQNTLVN QTFLQGNSGS  120
VSVSVSPKKR KTDEGQSLQL VSEKEKRIKG CAEEGDSKIT HQYSNCDNKS SNNSKEASTN  180
TSSKEKSKVS EVQKPDYIHV RARRGQATDS HSLAERVRRE KISERMKYLQ DLVPGCNKIT  240
GKAGMLDEII NYVQSLQKQV EFLSMKLATV NPELDFNIDN VFMKEMFQSS TSEFPALGCS  300
PETANSAYFQ LSSLEQAVSC CGLDMGMNST EMALRRSISV PTSVPGTFMD SSCFNQIQPT  360
ATWDADLQNL YKMEFEQGTL IPFQSHQFTG LNEGSNLKME M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	1e-57	bHLH family protein