PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979456.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 756aa MW: 84886.3 Da PI: 4.7005

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979456.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.5	1.9e-10	618	659	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W++++ el+++a++q+G++ + I ++++ gRt++q+k ++ k XP_024979456.1 618 KWSKQDTELFYEAIQQFGTD-LSMIKECFP-GRTREQIKAKYKK 659 8*****************.*****.********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence
MRFLYMFGFG SSPLPSDLLH ESESKVSTQH SHIDDGISHL VHFCCSVDGP ALHTSTTRFF 60 QQFSMDFDLD DLLSTDAANN AKTSTKFQPK AKPKPKPKPK PKIQLEQKSE SIPLRQFVED 120 VAAANNEFTG RIVEEQPGND VNQISGNIND DWQSSFEKSQ EVHGESFLTL ESLNDFPPQS 180 TIVTVNSPPC SNAPTGHVSI DGNLEKGPIE PDLSYNIDSC TNFESPAQLD PLTGEEAAIF 240 NDNGDFQIGN LSGPKDAESS QFWESLDILS HSKTCSGPRV GKFKPKPKAQ TRKPEQIVTS 300 PDKDLASVQY EENVHSVSSQ TNYMQNKDVP SFTEDDILGS ASVRVTDSAP TETIFDFHVN 360 EESMNLADQM DSVIPEEHLD AVTESPSAGP ESVKKGKRKT RKGLNPTQLD NSPESSLENQ 420 VGTSSERLRR RSNKTLEPID ESDDEGIDDG FVHGNEDSGD YEPGSEYLDE KKGSKSKKPV 480 NEKERPIRKR KKANEVPAES TKVAKKKFPH RTRRNKRQVN PDLLKMTEDE LEMHMHTVPM 540 KELIRLAEHR ERLAKKEAST SGTPARNQSA SSFSNNYDED EAFAQGTGSA YEHDYSMEAE 600 NATYYNYRTH MKITPRIKWS KQDTELFYEA IQQFGTDLSM IKECFPGRTR EQIKAKYKKE 660 ERQQPLRLSD ALTTRAKGHS QFEVVIERLK QAQAQDSEND DPTNLTGEED EDVTATDINA 720 GLDATKPVEL QKEVETDTKF EDSEDEMDWS QYKSEV

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence

MRFLYMFGFG SSPLPSDLLH ESESKVSTQH SHIDDGISHL VHFCCSVDGP ALHTSTTRFF  60
QQFSMDFDLD DLLSTDAANN AKTSTKFQPK AKPKPKPKPK PKIQLEQKSE SIPLRQFVED  120
VAAANNEFTG RIVEEQPGND VNQISGNIND DWQSSFEKSQ EVHGESFLTL ESLNDFPPQS  180
TIVTVNSPPC SNAPTGHVSI DGNLEKGPIE PDLSYNIDSC TNFESPAQLD PLTGEEAAIF  240
NDNGDFQIGN LSGPKDAESS QFWESLDILS HSKTCSGPRV GKFKPKPKAQ TRKPEQIVTS  300
PDKDLASVQY EENVHSVSSQ TNYMQNKDVP SFTEDDILGS ASVRVTDSAP TETIFDFHVN  360
EESMNLADQM DSVIPEEHLD AVTESPSAGP ESVKKGKRKT RKGLNPTQLD NSPESSLENQ  420
VGTSSERLRR RSNKTLEPID ESDDEGIDDG FVHGNEDSGD YEPGSEYLDE KKGSKSKKPV  480
NEKERPIRKR KKANEVPAES TKVAKKKFPH RTRRNKRQVN PDLLKMTEDE LEMHMHTVPM  540
KELIRLAEHR ERLAKKEAST SGTPARNQSA SSFSNNYDED EAFAQGTGSA YEHDYSMEAE  600
NATYYNYRTH MKITPRIKWS KQDTELFYEA IQQFGTDLSM IKECFPGRTR EQIKAKYKKE  660
ERQQPLRLSD ALTTRAKGHS QFEVVIERLK QAQAQDSEND DPTNLTGEED EDVTATDINA  720
GLDATKPVEL QKEVETDTKF EDSEDEMDWS QYKSEV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	394	402	KKGKRKTRK
2	488	492	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	7e-44	MYB_related family protein