PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979455.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB_related

Protein Properties

Length: 772aa MW: 86986.5 Da PI: 4.8543

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979455.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.5	2e-10	634	675	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W++++ el+++a++q+G++ + I ++++ gRt++q+k ++ k XP_024979455.1 634 KWSKQDTELFYEAIQQFGTD-LSMIKECFP-GRTREQIKAKYKK 675 8*****************.*****.********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 772 aa Download sequence
MNLNPKSALN TRISTTVFLT LFTSAVRWTG LHFTHQRRDF FNNSAWILIW MICFQLMLQT 60 MVYAFGFSFS LSLYSSSIDV LICHIYASMV GIIDLLTVAA KTSTKFQPKA KPKPKPKPKP 120 KIQLEQKSES IPLRQFVEDV AAANNEFTGR IVEEQPGNDV NQISGNINDD WQSSFEKSQE 180 VHGESFLTLE SLNDFPPQST IVTVNSPPCS NAPTGHVSID GNLEKGPIEP DLSYNIDSCT 240 NFESPAQLDP LTGEEAAIFN DNGDFQIGNL SGPKDAESSQ FWESLDILSH SKTCSGPRVG 300 KFKPKPKAQT RKPEQIVTSP DKDLASVQYE ENVHSVSSQT NYMQNKDVPS FTEDDILGSA 360 SVRVTDSAPT ETIFDFHVNE ESMNLADQMD SVIPEEHLDA VTESPSAGPE SVKKGKRKTR 420 KGLNPTQLDN SPESSLENQV GTSSERLRRR SNKTLEPIDE SDDEGIDDGF VHGNEDSGDY 480 EPGSEYLDEK KGSKSKKPVN EKERPIRKRK KANEVPAEST KVAKKKFPHR TRRNKRQDLL 540 KMTEDELEMH MHTVPMKELI RLAEHRERLA KKEASTSGTP ARNQSASSFS NNYDEDEAFA 600 QGTGSAYEHD YSMEAENATY YNYRTHMKIT PRIKWSKQDT ELFYEAIQQF GTDLSMIKEC 660 FPGRTREQIK AKYKKEERQQ PLRLSDALTT RAKGHSQFEV VIERLKQAQA QDSENDDPTN 720 LTGEEDEDVT ATDINAGLDA TKPVELQKEV ETDTKFEDSE DEMDWSQYKS EV

Sequence ? help Back to Top

Protein Sequence Length: 772 aa Download sequence

MNLNPKSALN TRISTTVFLT LFTSAVRWTG LHFTHQRRDF FNNSAWILIW MICFQLMLQT  60
MVYAFGFSFS LSLYSSSIDV LICHIYASMV GIIDLLTVAA KTSTKFQPKA KPKPKPKPKP  120
KIQLEQKSES IPLRQFVEDV AAANNEFTGR IVEEQPGNDV NQISGNINDD WQSSFEKSQE  180
VHGESFLTLE SLNDFPPQST IVTVNSPPCS NAPTGHVSID GNLEKGPIEP DLSYNIDSCT  240
NFESPAQLDP LTGEEAAIFN DNGDFQIGNL SGPKDAESSQ FWESLDILSH SKTCSGPRVG  300
KFKPKPKAQT RKPEQIVTSP DKDLASVQYE ENVHSVSSQT NYMQNKDVPS FTEDDILGSA  360
SVRVTDSAPT ETIFDFHVNE ESMNLADQMD SVIPEEHLDA VTESPSAGPE SVKKGKRKTR  420
KGLNPTQLDN SPESSLENQV GTSSERLRRR SNKTLEPIDE SDDEGIDDGF VHGNEDSGDY  480
EPGSEYLDEK KGSKSKKPVN EKERPIRKRK KANEVPAEST KVAKKKFPHR TRRNKRQDLL  540
KMTEDELEMH MHTVPMKELI RLAEHRERLA KKEASTSGTP ARNQSASSFS NNYDEDEAFA  600
QGTGSAYEHD YSMEAENATY YNYRTHMKIT PRIKWSKQDT ELFYEAIQQF GTDLSMIKEC  660
FPGRTREQIK AKYKKEERQQ PLRLSDALTT RAKGHSQFEV VIERLKQAQA QDSENDDPTN  720
LTGEEDEDVT ATDINAGLDA TKPVELQKEV ETDTKFEDSE DEMDWSQYKS EV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	413	421	KKGKRKTRK
2	507	511	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	3e-42	MYB_related family protein