PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979393.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 340aa MW: 38125.2 Da PI: 8.2075

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979393.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.8e-12	152	199	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L llP++ kK++Ka++Le A +YIk+Lq XP_024979393.1 152 QEHVFAERKRREKLAQRFISLYALLPQL-----KKMDKATVLEDASKYIKELQ 199 568889********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MDIPSTAWMP ELEMEEPHDF VNGQQQIYPY YSDSMNSFSS ETFKGHTNLV NQSVQTTTIN 60 EDPSKHQDHK VMKTSPFAPS YGSSSNTFTI SFGNLTLPPQ TNPHRPYGGS KLKYSHAVKT 120 EENTSTSLNE FHGSMEVARW VPSTSRNPRQ AQEHVFAERK RREKLAQRFI SLYALLPQLK 180 KMDKATVLED ASKYIKELQK QVKELEETQV KGKRIIQNST VSIGRSKLCG DPGGKDNASS 240 SKEIKTLSSS SAYDPEIVVR ISGCSTLVRI YCQRNPSLVL IALTEMERLH LAVISSNVLP 300 FSNTDLLITI TAQMSDELLM TAMDLVKCLQ SALRYSVTCT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	163	ERKRRE
2	159	164	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-32	bHLH family protein