PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024979339.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 839aa MW: 92164.6 Da PI: 6.3911 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 18 | 76 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_024979339.1 18 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 5679*****************************************************97 PP | |||||||
2 | START | 169.9 | 1.7e-53 | 162 | 370 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W + ++ +++l+v+ ++ g+++l XP_024979339.1 162 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPTWFRECRTVDVLDVLPTAngGTIELL 255 789*******************************************************.8888888888****************9999****** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++l+a+++l+ Rdf+ +Ry+ ++g++v++++S++++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h++l++++++++lr+l+ XP_024979339.1 256 YMQLYAPTTLATaRDFWLLRYTSVTEDGSLVVCERSLSNTQNGPSippVPNFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLY 350 ********************************************99999********************************************** PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s+++ ++kt++ +l+++++ XP_024979339.1 351 ESSTVLAQKTTMMALRQLRQ 370 ***************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 839 aa Download sequence |
MMALSCKDGK GAILDNGKYV RYTPEQVEAL ERLYHECPKP SSIRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKEA SRLQSVNRKL TAMNKLLMEE NDRLQKQVSH LVYENGCFRQ 120 HTQNATLATK DTSCESVVTS GQHHLTPQHP PRDASPAGLL SIAEETLTEF LSKATGTAVE 180 WVQMPGMKPG PDSIGIVAIS HGCTGVAARA CGLVGLEPTR VAEILKDRPT WFRECRTVDV 240 LDVLPTANGG TIELLYMQLY APTTLATARD FWLLRYTSVT EDGSLVVCER SLSNTQNGPS 300 IPPVPNFVRA EMLPSGYLIR PCEGGGSIIH IVDHMNLEAW SVPEVLRPLY ESSTVLAQKT 360 TMMALRQLRQ IAQEVSQSST PNWGRRPAAL RALSQRLSRG FNEAVNGFTD EGWSLMGTDG 420 MDDVTILVNS SPEKLMGLNL SFSNGYPSVN TSVMCAKASM LLQNVPPALL LRFLREHRSE 480 WADNNVDAYS AAAIKLGPCS LPGSRAGNFG GQIILPLAHT IEHEELLEVI KLEGVSHCPE 540 DALMARDMFL LQLCSGMDEN AVGMCSELVF APIDASFADD APLLPSGFRI IPLDFCKEAS 600 SPSRTLDLAS ALEVRGPGNK TSGDRSVSSG NARSVMTIAF EFAFESHMQE SVAAMARQYV 660 HSIISSVQRV ASALSPSHLN PNGGIQAPLG TPEAHTLARW ISHSYRCYLG VELLKVPGEG 720 SESILKSLWH QSDAILCCSL KALPVFTFSN QAGLDMLETT LVALQDIGLE KILDEHGRKS 780 LCSEFPQIMQ QGFACLQGGI CVSSMGRPVS YERAVAWKVL NEEDNAHCIC FMFVNWSFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |