PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024979110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 247aa MW: 28492.6 Da PI: 7.0707 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 80 | 132 | 5 | 57 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++t++q++ Le+ F +++++ e++++L+++lg++ rq+ +W+qN+Ra++k+ XP_024979110.1 80 KRLTEDQVRLLESSFDSTKKLEPERKQQLSRQLGIPPRQIAIWYQNKRARWKN 132 578************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 107.3 | 1.1e-34 | 79 | 169 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +rl+++qv+lLE+sF++++kLeperK++l+r+Lg+ prq+a+W+qn+RAR+k++ lE+dy++L+ +++a e+++L+keve+Lr+el++ XP_024979110.1 79 TKRLTEDQVRLLESSFDSTKKLEPERKQQLSRQLGIPPRQIAIWYQNKRARWKNQSLEHDYSMLQLQLQATLLETRHLQKEVEHLRAELNK 169 58*************************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MDDDENLGKR EXKLASQHLD THQTVGPDPL SINRNSPLSY SYPPSTTPIS SSLLELESNH 60 TTMNNFHNQK TISPHRHTTK RLTEDQVRLL ESSFDSTKKL EPERKQQLSR QLGIPPRQIA 120 IWYQNKRARW KNQSLEHDYS MLQLQLQATL LETRHLQKEV EHLRAELNKV RGEQLARNYK 180 YQRPPPVDSS FSRCGEDVGS SSRSLENDHV DNLYCYGEQV FQVEEMYAAA CMMGADLGLF 240 GSKTNLF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 3e-26 | HD-ZIP family protein |