PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024979084.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 28144.3 Da PI: 8.099 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.7 | 3.2e-11 | 48 | 94 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 rEr R +++ + ++ Lr llP+ + + +K +Ka+i++ A+e Ik L+ XP_024979084.1 48 SRERGRTRKMAKLYADLRALLPNlP---TEPKADKATIVKAAMESIKFLE 94 59*********************66...*******************995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MAKAAVSNDG GVVQKLTKGK GVMIDGENAD QGAEIMDHKR LKHEIRVSRE RGRTRKMAKL 60 YADLRALLPN LPTEPKADKA TIVKAAMESI KFLEQTLQNL QKQKVERLQG HVPNDATAVV 120 PTVPSQNPVI NNNGDEPLLV NQQQQQQQGS LNVFETWTSP NVTISMCGTD AHISICSLKK 180 PGLFTTICFI LKNHNHDIVS AQISSDDAKT MYMIHVRANV PPEFAEGFPY EEMYKKAVEQ 240 IVLWINFEKL EN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 6e-32 | bHLH family protein |