PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024979083.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 270aa MW: 30403.8 Da PI: 6.73 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.9 | 1.3e-11 | 42 | 89 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er RR+++ + ++ L++llP+ + ++++K+ Ka+i++ A++ I+ L+ XP_024979083.1 42 SAERGRRRKMSNLYAHLQTLLPNlP--PHHPKVAKATIVKAAMDSIQFLE 89 68*********************66..79******************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence |
MAKAGVSNDN ENHKVAKGKG VMMNGEDDEM DHKKRKLETR VSAERGRRRK MSNLYAHLQT 60 LLPNLPPHHP KVAKATIVKA AMDSIQFLEQ TLQNLQKQKV ERLQSHVSKD ATAVVPFVPS 120 QNQVVNNNDD EPLFVNQQQQ GSLNVFETWT SPNVTISMCG TDAHISICSL KKPGLFTTIC 180 FILKNHNHDI VSAQICSDDA KTMYMIHVRA ALSSDFYIAI SVSESEVDEV LATRVLCLLD 240 AIQDTYFCHL DSYVVLYNLE CKMDDYMYIA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 50 | KKRKLETRVSAERGRRRK |
2 | 34 | 51 | KKRKLETRVSAERGRRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 7e-26 | bHLH family protein |