PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024979083.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 270aa    MW: 30403.8 Da    PI: 6.73
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024979083.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-114289755
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                     +Er RR+++ + ++ L++llP+ +  ++++K+ Ka+i++ A++ I+ L+
  XP_024979083.1 42 SAERGRRRKMSNLYAHLQTLLPNlP--PHHPKVAKATIVKAAMDSIQFLE 89
                    68*********************66..79******************985 PP

Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MAKAGVSNDN ENHKVAKGKG VMMNGEDDEM DHKKRKLETR VSAERGRRRK MSNLYAHLQT  60
LLPNLPPHHP KVAKATIVKA AMDSIQFLEQ TLQNLQKQKV ERLQSHVSKD ATAVVPFVPS  120
QNQVVNNNDD EPLFVNQQQQ GSLNVFETWT SPNVTISMCG TDAHISICSL KKPGLFTTIC  180
FILKNHNHDI VSAQICSDDA KTMYMIHVRA ALSSDFYIAI SVSESEVDEV LATRVLCLLD  240
AIQDTYFCHL DSYVVLYNLE CKMDDYMYIA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13350KKRKLETRVSAERGRRRK
23451KKRKLETRVSAERGRRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.17e-26bHLH family protein