PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979080.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TALE

Protein Properties

Length: 370aa MW: 40173.1 Da PI: 6.4319

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979080.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.4e-09	300	334	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ XP_024979080.1 300 KWPYPSEAQKLALAESTGLDQKQINNWFINQRKRH 334 569*****************************885 PP
2	ELK	41.1	3.8e-14	254	275	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ XP_024979080.1 254 ELKGQLLRKYSGYLGSLKQEFM 275 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MEGGGGGGGG TSCLMSFGDN SSSNSNNNNI GSLCLPPPPV AYSNNNLIYS DHHHHHHSNC 60 GTSASALMLQ DNNNININDG GGGLGFMTSS SCSSIRAKIM SHPHYPRLLS AYLNCQKIGA 120 PPEVVGRLEE ACRASVVAAM SSCSASAGCE AGTSDGGGGG GGGGMNMMII GQDPALDQFM 180 EAYCEMLIKY EQELSKPFKE AMLFLSRVES QFKAISISTS ASGGGEGGTE KNGSSEEEVD 240 VNNNLIDPQA EDRELKGQLL RKYSGYLGSL KQEFMKKRKK GKLPKEARQQ LLDWWTRHYK 300 WPYPSEAQKL ALAESTGLDQ KQINNWFINQ RKRHWKPSED MQFVVMDAAH PPYFMENILG 360 NPYPMDVSLL

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MEGGGGGGGG TSCLMSFGDN SSSNSNNNNI GSLCLPPPPV AYSNNNLIYS DHHHHHHSNC  60
GTSASALMLQ DNNNININDG GGGLGFMTSS SCSSIRAKIM SHPHYPRLLS AYLNCQKIGA  120
PPEVVGRLEE ACRASVVAAM SSCSASAGCE AGTSDGGGGG GGGGMNMMII GQDPALDQFM  180
EAYCEMLIKY EQELSKPFKE AMLFLSRVES QFKAISISTS ASGGGEGGTE KNGSSEEEVD  240
VNNNLIDPQA EDRELKGQLL RKYSGYLGSL KQEFMKKRKK GKLPKEARQQ LLDWWTRHYK  300
WPYPSEAQKL ALAESTGLDQ KQINNWFINQ RKRHWKPSED MQFVVMDAAH PPYFMENILG  360
NPYPMDVSLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	279	LKQEFMKKRK
2	276	280	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-116	TALE family protein