PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979035.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

M-type_MADS

Protein Properties

Length: 280aa MW: 32406.9 Da PI: 8.2254

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979035.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.2	1.2e-14	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i + r++t+ kR++gi+KKA+E +LCd++ +i++ ++ XP_024979035.1 11 ITKEKTRNTTYQKRKHGIIKKANEFTILCDVDTVMIVYPPN 51 6677889*****************************99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MGRAKLKMEL ITKEKTRNTT YQKRKHGIIK KANEFTILCD VDTVMIVYPP NSNHPEIWPE 60 NPNQINKTIA SYKAKKSESG KRTYDLNDFF QDRKKKIEDE LVKARKKNME AKYSTWFEEL 120 NGLSEGQLRQ FAVGLENKEN IVRAHLELKK RSLNMQMPFR FELENNQPGI HYVGPHPSLD 180 QVQGMNMNMN HHLMNHDLGW FNEAPSTSFI PLKREMGGFG YPVFEGGVVY DNSNPWAFQP 240 VVQCGLMPDL ALQDSHVMNY DAYDGVGDFV MDDHRGRFMG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	6e-25	M-type_MADS family protein