PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024979005.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 759aa MW: 88130.6 Da PI: 8.702

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024979005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.7	8.4e-23	63	157	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 Y +YA ++GF+vr++++k++ ++g+i +r+fvCs+eg++++++ + e++ r+++ +r+gC+a++k++++k + +e+++++++HnH+l XP_024979005.1 63 VYXDYADKAGFDVRVHAKKTN-KHGNIQNRWFVCSREGNPKKSQFNsldiqpGERRYRNTNLKRCGCNACIKIRLTKdGDCYEIYEFVEQHNHAL 156 79***********998887.7777*************9999998999999**************98899***********9 PP FAR1 90 a 90 + XP_024979005.1 157 F 157 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence
MNNSFEDIDS AYGSGDLTPP HTDFEYDIGE TSEGXKFFIP NVDDTLKPKT NAQYETLNDA 60 EKVYXDYADK AGFDVRVHAK KTNKHGNIQN RWFVCSREGN PKKSQFNSLD IQPGERRYRN 120 TNLKRCGCNA CIKIRLTKDG DCYEIYEFVE QHNHALFNDN DRRFSKKNRQ MKYTDFKXVL 180 NSSSYKVGAR RAHRIQTXLN GGFEHTRVSE IDFKNFKRDA VACVGNKDAT MLINKLSNRR 240 DVVPDYFFEY KCNENELIAI FWADEVARIN YKXFGDVISF DGTYRTNKHA MIFVPFLAVD 300 NHKASVVVGS ALISGETIEN FTWVLKAFIK CHXKQPVFVI TDQCSAMKQA IPMVFTEAKH 360 RLCMWHIMKK VPSKVSVALN QDPSFNKVIN TLVWNIHIGP XEFEXRWHEM IEQYNLGGDT 420 WFTDMYAIRH SWIPAFYKDT PMSGLMKTTS RSESSNSYIN IYESYWFDLV QFLNNYDVXI 480 EKQRYRQSVH ETVTRTTNPK FVTPLRLESY ASRIYSRNVF SDIQKEIKKA VWCCAIENVE 540 CRDVLKTFVI SHKTKKSSEK ITYLVNRNYS TXTVECECNL FTRNGYLCRH AFKVLINDEV 600 EFIPDRYVLR RWKRHLVPVQ IQSSRVRYGE VDGEKEKCIS NVYSKVDDII SIARNDKSIL 660 ARFERNLDAF MVDIAKELPY EDPSQQRMDA IREHLGVSIP DEVDILPPSG IRNKGCGTGK 720 RLVSVSEKIQ TNSKKTKRRC ATCGQRSGHD SRNCPELVD

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence

MNNSFEDIDS AYGSGDLTPP HTDFEYDIGE TSEGXKFFIP NVDDTLKPKT NAQYETLNDA  60
EKVYXDYADK AGFDVRVHAK KTNKHGNIQN RWFVCSREGN PKKSQFNSLD IQPGERRYRN  120
TNLKRCGCNA CIKIRLTKDG DCYEIYEFVE QHNHALFNDN DRRFSKKNRQ MKYTDFKXVL  180
NSSSYKVGAR RAHRIQTXLN GGFEHTRVSE IDFKNFKRDA VACVGNKDAT MLINKLSNRR  240
DVVPDYFFEY KCNENELIAI FWADEVARIN YKXFGDVISF DGTYRTNKHA MIFVPFLAVD  300
NHKASVVVGS ALISGETIEN FTWVLKAFIK CHXKQPVFVI TDQCSAMKQA IPMVFTEAKH  360
RLCMWHIMKK VPSKVSVALN QDPSFNKVIN TLVWNIHIGP XEFEXRWHEM IEQYNLGGDT  420
WFTDMYAIRH SWIPAFYKDT PMSGLMKTTS RSESSNSYIN IYESYWFDLV QFLNNYDVXI  480
EKQRYRQSVH ETVTRTTNPK FVTPLRLESY ASRIYSRNVF SDIQKEIKKA VWCCAIENVE  540
CRDVLKTFVI SHKTKKSSEK ITYLVNRNYS TXTVECECNL FTRNGYLCRH AFKVLINDEV  600
EFIPDRYVLR RWKRHLVPVQ IQSSRVRYGE VDGEKEKCIS NVYSKVDDII SIARNDKSIL  660
ARFERNLDAF MVDIAKELPY EDPSQQRMDA IREHLGVSIP DEVDILPPSG IRNKGCGTGK  720
RLVSVSEKIQ TNSKKTKRRC ATCGQRSGHD SRNCPELVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-66	FAR1 family protein