PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978964.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 783aa MW: 90861.8 Da PI: 7.1663

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.1	2.6e-22	145	240	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++YA ++GF+vr++ +k++ ++gei +r+fvCs+eg++++++ + +e++ r+++ +r+gC+a++k++++k ++ +e++++++ HnH+ XP_024978964.1 145 KMYRTYADNAGFDVRMHVKKTN-KHGEIQTRWFVCSREGNPKKKDFDslymqpDERRYRNTNIKRCGCNACIKIHLTKdRACYEIYEFVEAHNHA 238 68***********9887776.8888************9999999999999***************98999*********** PP FAR1 89 la 90 l+ XP_024978964.1 239 LF 240 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence
MENPIVKQLQ DNVNDKLNSG YEYGRNTIPD DEEDDQSVPI AAVFVYPLGC CVNVVVVHIG 60 AVHTKRMADH GHMNKDDSII VIPTLIPHPN YFVPSDLDSI TSSQQEVDYD IGESSDGIKF 120 FIPKVDDALK PNMKAQYATI NEVEKMYRTY ADNAGFDVRM HVKKTNKHGE IQTRWFVCSR 180 EGNPKKKDFD SLYMQPDERR YRNTNIKRCG CNACIKIHLT KDRACYEIYE FVEAHNHALF 240 NNNDCRFSRK NRQMKYTDFK TVLNSSSYKV DARRSHRIQT ALNGGFERTL ISEIDFKNFK 300 RDVVACVELS AIFWADEVAR INYKEFGDVI LFDGTFRTNK HAMIFVLFLA VDNHKASVVG 360 SALISGETID NFTSMFCNET SYSKGVHRIQ ALTMYVAHYE EGPFKEAXLT QVSVXLNHDT 420 TFNKVINKLV WNIHIGPSEF ERRWNEMVDK YNLAGDTWFT EMYEIRHSWI PXYYKNXXMS 480 GLMKTTSRSE SSNXYINIYE SYWFDLVQFL NNYDVAIEKQ RYRQSXHESV TRTTNPKFXT 540 PLXJERHASS IYSRNVFFDI QKEIKKXVXF CAIETVECRD DFKSFVISQT AKKSDDNISY 600 LVGXXYSTNT VECDCNLFTR NGYLCRHAFK VLINDEVECI PEKYVLRRWK RXLVPVQIQS 660 ARVRYGEVNX EKEKSIXELY SKXDBIISIX RNDQXILDRL GRNLEEFMVD IEKEVPYEDP 720 SQQKLDAIRD HLGVSIPDEV DILPPSGIRN KGCGTGKRLV SVSEKMQTNC KKAKRKCATC 780 WTT

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence

MENPIVKQLQ DNVNDKLNSG YEYGRNTIPD DEEDDQSVPI AAVFVYPLGC CVNVVVVHIG  60
AVHTKRMADH GHMNKDDSII VIPTLIPHPN YFVPSDLDSI TSSQQEVDYD IGESSDGIKF  120
FIPKVDDALK PNMKAQYATI NEVEKMYRTY ADNAGFDVRM HVKKTNKHGE IQTRWFVCSR  180
EGNPKKKDFD SLYMQPDERR YRNTNIKRCG CNACIKIHLT KDRACYEIYE FVEAHNHALF  240
NNNDCRFSRK NRQMKYTDFK TVLNSSSYKV DARRSHRIQT ALNGGFERTL ISEIDFKNFK  300
RDVVACVELS AIFWADEVAR INYKEFGDVI LFDGTFRTNK HAMIFVLFLA VDNHKASVVG  360
SALISGETID NFTSMFCNET SYSKGVHRIQ ALTMYVAHYE EGPFKEAXLT QVSVXLNHDT  420
TFNKVINKLV WNIHIGPSEF ERRWNEMVDK YNLAGDTWFT EMYEIRHSWI PXYYKNXXMS  480
GLMKTTSRSE SSNXYINIYE SYWFDLVQFL NNYDVAIEKQ RYRQSXHESV TRTTNPKFXT  540
PLXJERHASS IYSRNVFFDI QKEIKKXVXF CAIETVECRD DFKSFVISQT AKKSDDNISY  600
LVGXXYSTNT VECDCNLFTR NGYLCRHAFK VLINDEVECI PEKYVLRRWK RXLVPVQIQS  660
ARVRYGEVNX EKEKSIXELY SKXDBIISIX RNDQXILDRL GRNLEEFMVD IEKEVPYEDP  720
SQQKLDAIRD HLGVSIPDEV DILPPSGIRN KGCGTGKRLV SVSEKMQTNC KKAKRKCATC  780
WTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-48	FAR1 family protein