PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978958.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 413aa MW: 46247.9 Da PI: 5.2591

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.8	7.2e-52	30	157	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yL++k+ gk++++ e+++e+d+yk+ePw+L +++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++v XP_024978958.1 30 LAPGFRFHPTDEELVRYYLRRKACGKPFRF-EAVSEIDVYKSEPWELAdySSLKTRDLEWYFFSPVDRKYGNGSRLNRATGRGYWKATGKDRPVR 123 579***********************99.89**********84347777888*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + k+e +g+kktLvf++grap+g++t+Wvmheyrl XP_024978958.1 124 H-KSEMIGMKKTLVFHSGRAPDGQRTNWVMHEYRL 157 .999***************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MSQELMCVAQ PAAPPTLPAA APSSPPPTSL APGFRFHPTD EELVRYYLRR KACGKPFRFE 60 AVSEIDVYKS EPWELADYSS LKTRDLEWYF FSPVDRKYGN GSRLNRATGR GYWKATGKDR 120 PVRHKSEMIG MKKTLVFHSG RAPDGQRTNW VMHEYRLLDQ ELERAGVVQD AFVLCRIFQK 180 SGLGPPNGDR YAPFIEEEWD DDATLMVPGG ETEDDMTTGD EAQAQGNDFV QEVADINVPY 240 RSEGSLMDHP ETIPFVCKRE RAEGCVLNRG PAELQTFSLF HNKRPKQSAL NANGSNGNGS 300 EDSTTSQDPR TTKVSSALME FPLLQSLEAK ESYPSGSQPS FDSSTLEKSV PPGYLKFIHN 360 LENEILNVSM ERETLKIEVM RAQAMINILQ AKIGELSREN DELKRGRAGN VVA

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MSQELMCVAQ PAAPPTLPAA APSSPPPTSL APGFRFHPTD EELVRYYLRR KACGKPFRFE  60
AVSEIDVYKS EPWELADYSS LKTRDLEWYF FSPVDRKYGN GSRLNRATGR GYWKATGKDR  120
PVRHKSEMIG MKKTLVFHSG RAPDGQRTNW VMHEYRLLDQ ELERAGVVQD AFVLCRIFQK  180
SGLGPPNGDR YAPFIEEEWD DDATLMVPGG ETEDDMTTGD EAQAQGNDFV QEVADINVPY  240
RSEGSLMDHP ETIPFVCKRE RAEGCVLNRG PAELQTFSLF HNKRPKQSAL NANGSNGNGS  300
EDSTTSQDPR TTKVSSALME FPLLQSLEAK ESYPSGSQPS FDSSTLEKSV PPGYLKFIHN  360
LENEILNVSM ERETLKIEVM RAQAMINILQ AKIGELSREN DELKRGRAGN VVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10490.2	1e-108	NAC family protein