PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024978954.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | NAC | ||||||||
Protein Properties | Length: 413aa MW: 46247.9 Da PI: 5.2591 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.8 | 7.2e-52 | 30 | 157 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yL++k+ gk++++ e+++e+d+yk+ePw+L +++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++v XP_024978954.1 30 LAPGFRFHPTDEELVRYYLRRKACGKPFRF-EAVSEIDVYKSEPWELAdySSLKTRDLEWYFFSPVDRKYGNGSRLNRATGRGYWKATGKDRPVR 123 579*************************99.89**************84347777888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + k+e +g+kktLvf++grap+g++t+Wvmheyrl XP_024978954.1 124 H-KSEMIGMKKTLVFHSGRAPDGQRTNWVMHEYRL 157 *.999****************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence |
MSQELMCVAQ PAAPPTLPAA APSSPPPTSL APGFRFHPTD EELVRYYLRR KACGKPFRFE 60 AVSEIDVYKS EPWELADYSS LKTRDLEWYF FSPVDRKYGN GSRLNRATGR GYWKATGKDR 120 PVRHKSEMIG MKKTLVFHSG RAPDGQRTNW VMHEYRLLDQ ELERAGVVQD AFVLCRIFQK 180 SGLGPPNGDR YAPFIEEEWD DDATLMVPGG ETEDDMTTGD EAQAQGNDFV QEVADINVPY 240 RSEGSLMDHP ETIPFVCKRE RAEGCVLNRG PAELQTFSLF HNKRPKQSAL NANGSNGNGS 300 EDSTTSQDPR TTKVSSALME FPLLQSLEAK ESYPSGSQPS FDSSTLEKSV PPGYLKFIHN 360 LENEILNVSM ERETLKIEVM RAQAMINILQ AKIGELSREN DELKRGRAGN VVA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.2 | 1e-108 | NAC family protein |