PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978783.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 363aa MW: 41349.4 Da PI: 8.5737

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978783.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.9	4.8e-27	70	153	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rre+++ ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk+k+ ++k++ + +++ y+++le XP_024978783.1 70 WVQEETRILIGLRREVDRFFNTSKSNKHLWEQISSKMRDKGFDRSPTMCTDKWRNLLKEFKKVKHKNGKGS-GGATKMLYYKDLE 153 *******************************************************************95.5556999*998 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MYLSSDKPRS IDFYKEATAD RAMLIEPEHP PHPHPQQPQQ QLMIMADNNN NTSSGDDHEL 60 RAPKKRAETW VQEETRILIG LRREVDRFFN TSKSNKHLWE QISSKMRDKG FDRSPTMCTD 120 KWRNLLKEFK KVKHKNGKGS GGATKMLYYK DLEELIRDRA KNGTYKATSP TSSKLDSFIQ 180 FSDKGLEDGS IPFGPMEAEA VAANGVPPWN WRETPGNGGE GQSSYGRIIT VKWGEYTRRI 240 GIDGSTKAIK EAIKSAFGIR SKRAFWLEDE DGVIRALDRS MPVGSYNLHL DEGVSIKICH 300 YDESGRIAVR TEDKTFYTEE HLHEFLSQRG LSGLREINGY RSSNNVDDLR LGAVYQEVRL 360 LGD

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MYLSSDKPRS IDFYKEATAD RAMLIEPEHP PHPHPQQPQQ QLMIMADNNN NTSSGDDHEL  60
RAPKKRAETW VQEETRILIG LRREVDRFFN TSKSNKHLWE QISSKMRDKG FDRSPTMCTD  120
KWRNLLKEFK KVKHKNGKGS GGATKMLYYK DLEELIRDRA KNGTYKATSP TSSKLDSFIQ  180
FSDKGLEDGS IPFGPMEAEA VAANGVPPWN WRETPGNGGE GQSSYGRIIT VKWGEYTRRI  240
GIDGSTKAIK EAIKSAFGIR SKRAFWLEDE DGVIRALDRS MPVGSYNLHL DEGVSIKICH  300
YDESGRIAVR TEDKTFYTEE HLHEFLSQRG LSGLREINGY RSSNNVDDLR LGAVYQEVRL  360
LGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-142	Trihelix family protein