PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978781.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 382aa MW: 43383.7 Da PI: 7.3658

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.8	5.3e-27	70	153	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rre+++ ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk+k+ ++k++ + +++ y+++le XP_024978781.1 70 WVQEETRILIGLRREVDRFFNTSKSNKHLWEQISSKMRDKGFDRSPTMCTDKWRNLLKEFKKVKHKNGKGS-GGATKMLYYKDLE 153 *******************************************************************95.5556999*998 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MYLSSDKPRS IDFYKEATAD RAMLIEPEHP PHPHPQQPQQ QLMIMADNNN NTSSGDDHEL 60 RAPKKRAETW VQEETRILIG LRREVDRFFN TSKSNKHLWE QISSKMRDKG FDRSPTMCTD 120 KWRNLLKEFK KVKHKNGKGS GGATKMLYYK DLEELIRDRA KNGTYKATSP TSSKLDSFIQ 180 FSDKGLEDGS IPFGPMEVVN LERPLDNDGD PLAITTAEAV AANGVPPWNW RETPGNGGEG 240 QSSYGRIITV KWGEYTRRIG IDGSTKAIKE AIKSAFGIRS KRAFWLEDED GVIRALDRSM 300 PVGSYNLHLD EGVSIKICHY DESGRIAVRT EDKTFYTEEH LHEFLSQRGL SGLREINGYR 360 SSNNVDDLRL GAVYQEVRLL GD

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MYLSSDKPRS IDFYKEATAD RAMLIEPEHP PHPHPQQPQQ QLMIMADNNN NTSSGDDHEL  60
RAPKKRAETW VQEETRILIG LRREVDRFFN TSKSNKHLWE QISSKMRDKG FDRSPTMCTD  120
KWRNLLKEFK KVKHKNGKGS GGATKMLYYK DLEELIRDRA KNGTYKATSP TSSKLDSFIQ  180
FSDKGLEDGS IPFGPMEVVN LERPLDNDGD PLAITTAEAV AANGVPPWNW RETPGNGGEG  240
QSSYGRIITV KWGEYTRRIG IDGSTKAIKE AIKSAFGIRS KRAFWLEDED GVIRALDRSM  300
PVGSYNLHLD EGVSIKICHY DESGRIAVRT EDKTFYTEEH LHEFLSQRGL SGLREINGYR  360
SSNNVDDLRL GAVYQEVRLL GD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-153	Trihelix family protein