PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024978780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | Trihelix | ||||||||
Protein Properties | Length: 387aa MW: 43871.1 Da PI: 7.7675 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 85.8 | 5.4e-27 | 70 | 153 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rre+++ ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk+k+ ++k++ + +++ y+++le XP_024978780.1 70 WVQEETRILIGLRREVDRFFNTSKSNKHLWEQISSKMRDKGFDRSPTMCTDKWRNLLKEFKKVKHKNGKGS-GGATKMLYYKDLE 153 *********************************************************************95.5556999***998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence |
MYLSSDKPRS IDFYKEATAD RAMLIEPEHP PHPHPQQPQQ QLMIMADNNN NTSSGDDHEL 60 RAPKKRAETW VQEETRILIG LRREVDRFFN TSKSNKHLWE QISSKMRDKG FDRSPTMCTD 120 KWRNLLKEFK KVKHKNGKGS GGATKMLYYK DLEELIRDRA KNGTYKATSP TSSKLDSFIQ 180 FSDKGLEDGS IPFGPMEANG RSTVNLERPL DNDGDPLAIT TAEAVAANGV PPWNWRETPG 240 NGGEGQSSYG RIITVKWGEY TRRIGIDGST KAIKEAIKSA FGIRSKRAFW LEDEDGVIRA 300 LDRSMPVGSY NLHLDEGVSI KICHYDESGR IAVRTEDKTF YTEEHLHEFL SQRGLSGLRE 360 INGYRSSNNV DDLRLGAVYQ EVRLLGD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-159 | Trihelix family protein |