PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978694.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 324aa MW: 35813.5 Da PI: 4.8593

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978694.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.7	9.8e-14	142	189	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++N f L llP++ kK++Ka++Le A +YIk+Lq XP_024978694.1 142 QDHVLAERKRREKLNRHFISLSALLPNL-----KKMDKATVLEDASNYIKELQ 189 56999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MDVSSAWLSA ELEMEDQGFM NYDQMSKLYG PIDDISADSF SSGSYTENMS FLDQSFQTQQ 60 PQIELPSYQE KSSTGISKCS PTPAPTPSPT PDPLVPTTLP SSNTFTISFG DLDPKNEILQ 120 FRDSLAGTTK VPTMARNPVQ AQDHVLAERK RREKLNRHFI SLSALLPNLK KMDKATVLED 180 ASNYIKELQG RLKELEGSPG NIKKKNVQES TVISIKRSRL SSSDDEYSSS DEMNSGESTN 240 PFKSSPEIEV RMSGTSVLVR IQCQKSFSSM VKALNQMQKL GMSIISSSAM PFAKTTLLIT 300 IVAQTEDDFC MTTSELVKNL QLAI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	153	ERKRRE
2	149	154	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-39	bHLH family protein