PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024978693.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 324aa MW: 35813.5 Da PI: 4.8593 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.7 | 9.8e-14 | 142 | 189 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++N f L llP++ kK++Ka++Le A +YIk+Lq XP_024978693.1 142 QDHVLAERKRREKLNRHFISLSALLPNL-----KKMDKATVLEDASNYIKELQ 189 56999***********************.....9******************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence |
MDVSSAWLSA ELEMEDQGFM NYDQMSKLYG PIDDISADSF SSGSYTENMS FLDQSFQTQQ 60 PQIELPSYQE KSSTGISKCS PTPAPTPSPT PDPLVPTTLP SSNTFTISFG DLDPKNEILQ 120 FRDSLAGTTK VPTMARNPVQ AQDHVLAERK RREKLNRHFI SLSALLPNLK KMDKATVLED 180 ASNYIKELQG RLKELEGSPG NIKKKNVQES TVISIKRSRL SSSDDEYSSS DEMNSGESTN 240 PFKSSPEIEV RMSGTSVLVR IQCQKSFSSM VKALNQMQKL GMSIISSSAM PFAKTTLLIT 300 IVAQTEDDFC MTTSELVKNL QLAI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 153 | ERKRRE |
2 | 149 | 154 | RKRREK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-39 | bHLH family protein |