PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024978595.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 260aa MW: 29749.2 Da PI: 5.8333 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5e-18 | 64 | 117 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++++LA+ lgL+ rqV +WFqNrRa++k XP_024978595.1 64 KKRRLNLEQVKALEKSFELGNKLEPERKRQLARVLGLQPRQVAIWFQNRRARWK 117 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.2 | 1.6e-41 | 63 | 154 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqvk+LE+sFe +kLeperK +lar Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++d++k++n++L++++++L+++l XP_024978595.1 63 EKKRRLNLEQVKALEKSFELGNKLEPERKRQLARVLGLQPRQVAIWFQNRRARWKTKQLEKDYNVLKRHFDSIKADNDALKNQNNKLHAQLV 154 69**************************************************************************************9996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MSFLPPEPMF FGYELDHHHH PHHFQGVEPL MMRRSMSYSG REAEEMNAGD GETSEDEGCQ 60 LGEKKRRLNL EQVKALEKSF ELGNKLEPER KRQLARVLGL QPRQVAIWFQ NRRARWKTKQ 120 LEKDYNVLKR HFDSIKADND ALKNQNNKLH AQLVALKSGE PNGVRAMVNL NKETEGSWSN 180 GSDNSCEDNN TIFYTQISNN SSMIGGGLTP PYLLGQPLNQ EAVAGDHEGF CTNMLNVMED 240 QQPAAFWPWP ESEQQQQPEL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 120 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 7e-67 | HD-ZIP family protein |